FastQCFastQC Report
Thu 26 May 2016
SRR1926731_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1926731_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2469
Sequences flagged as poor quality0
Sequence length25
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTAAAGTGTGTATTTCTCATTT40.16200891049007696No Hit
GTATCAACGCAGAGTACTTTTTTTT40.16200891049007696No Hit
GTCCTACAGTGGACATTTCTAAATT30.12150668286755771No Hit
TATCAACGCAGAGTACTTTTTTTTT30.12150668286755771No Hit
GCCATATTCCATGTCCTACAGTGGA30.12150668286755771No Hit
GGTATCAACGCAGAGTACTTTTTTT30.12150668286755771No Hit
ACGCAGAGTACTTTTTTTTTTTTTT30.12150668286755771No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)