FastQCFastQC Report
Thu 26 May 2016
SRR1926722_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1926722_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1769
Sequences flagged as poor quality0
Sequence length25
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGA50.2826455624646693No Hit
CTGAAGGACCTGGAATATGGCGAGA30.1695873374788016No Hit
CTGTAGGACCTGGAATATGGCAAGA30.1695873374788016No Hit
CTGTAGGACATGGAATATGGCAAGA30.1695873374788016No Hit
GATACCACTGCTTCCCATGTACTCT20.11305822498586772No Hit
CTGTAGACCAGGCTGGCCTCGAACT20.11305822498586772No Hit
GTCCTACAGTGGACATTTCTAAATT20.11305822498586772No Hit
ATACACATCTCCGAGCCCACGAGAC20.11305822498586772No Hit
GGTATCAACGCAGAGTACTTTTTTT20.11305822498586772No Hit
ACGCAGAGTACTTTTTTTTTTTTTT20.11305822498586772No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)