SRR1565900_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1565900_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13242602
Sequences flagged as poor quality	0
Sequence length	25
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACATGGGAAGCAGTGGTATCAAC	111414	0.8413301253031693	No Hit
CCCATGTACTCTGCGTTGATACCAC	72296	0.545935005824384	No Hit
GAGTACATGGGAAGCAGTGGTATCA	45935	0.3468729181772585	No Hit
GTATCAACGCAGAGTACTTTTTTTT	41013	0.30970499604231855	No Hit
GTATCAACGCAGAGTACATGGGAAG	27482	0.20752719140845582	No Hit
GGTATCAACGCAGAGTACTTTTTTT	26967	0.20363822759303646	No Hit
TATCAACGCAGAGTACTTTTTTTTT	25548	0.1929228107889975	No Hit
TATCAACGCAGAGTACATGGGAAGC	24252	0.18313621446902958	No Hit
GCGTTGATACCACTGCTTCCCATGT	24153	0.18238862725014315	No Hit
CATGTACTCTGCGTTGATACCACTG	23974	0.18103692914730804	No Hit
ACGCAGAGTACATGGGAAGCAGTGG	22193	0.16758791059340153	No Hit
GGTATCAACGCAGAGTACATGGGAA	19592	0.14794675547902142	No Hit
ACTCTGCGTTGATACCACTGCTTCC	15489	0.11696341851850564	No Hit
GTGGTATCAACGCAGAGTACATGGG	13608	0.1027592613596633	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATTAC	840	9.168014	1
GTATTAG	980	8.742356	1
CCATGTA	20235	8.380983	2
GTCTTAA	1230	8.374198	1
CTAATAC	955	8.347622	3
TGCGTTG	20465	8.321809	12
CTGCGTT	20585	8.304697	11
GTCTAGA	1360	8.2815485	1
ACCGTCC	470	8.270531	8
AGTGGTA	28480	8.206845	14
GTCCTAT	975	8.194795	1
CTAGACA	1255	8.167081	4
TAGACAG	1775	8.073566	5
CGTATCA	490	8.054755	1
TAATACT	1650	8.052504	4
TCTGCGT	21385	7.997673	10
TGGTATC	29525	7.944794	16
GTGGTAT	29620	7.9358625	15
CTCTGCG	21940	7.926731	9
TAAGACT	1390	7.9200883	4