SRR1565900_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1565900_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13242602
Sequences flagged as poor quality	0
Sequence length	25
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACATGGGAAGCAGTGGTATCAAC	117447	0.8868876373389459	No Hit
CCCATGTACTCTGCGTTGATACCAC	80229	0.6058401513539409	No Hit
GAGTACATGGGAAGCAGTGGTATCA	49711	0.3753869518996342	No Hit
GTATCAACGCAGAGTACTTTTTTTT	42803	0.32322197707066935	No Hit
GGTATCAACGCAGAGTACTTTTTTT	29424	0.22219198311630903	No Hit
GTATCAACGCAGAGTACATGGGAAG	29239	0.2207949766971778	No Hit
TATCAACGCAGAGTACTTTTTTTTT	29164	0.22022862274347593	No Hit
TATCAACGCAGAGTACATGGGAAGC	28610	0.2160451548721316	No Hit
CATGTACTCTGCGTTGATACCACTG	27686	0.20906767416252486	No Hit
GCGTTGATACCACTGCTTCCCATGT	25887	0.19548273065972985	No Hit
ACGCAGAGTACATGGGAAGCAGTGG	25659	0.19376101464047624	No Hit
GGTATCAACGCAGAGTACATGGGAA	21793	0.1645673561736583	No Hit
ACTCTGCGTTGATACCACTGCTTCC	16888	0.12752780760155746	No Hit
GTGGTATCAACGCAGAGTACATGGG	15195	0.1147433110199944	No Hit
ACGCAGAGTACTTTTTTTTTTTTTT	13306	0.10047874277275719	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGACT	1405	0.0	8.862893	4
TCTTATA	1290	0.0	8.768619	2
CTAATAC	1090	0.0	8.633415	3
TAGGACG	770	0.0	8.394575	4
ATAGGAC	1060	0.0	8.339712	3
ACACCGT	760	0.0	8.249518	6
GTCCTAG	1445	0.0	8.165469	1
TAATACT	1560	0.0	8.165085	4
TGCGTTG	20560	0.0	8.149194	12
GTACTAG	680	0.0	8.11608	1
AGTGGTA	28975	0.0	8.082025	14
GTAGGAC	1400	0.0	8.079656	3
TAGACAG	1885	0.0	8.068432	5
CCATGTA	20580	0.0	8.064414	2
CTGCGTT	20925	0.0	8.039153	11
GTATAAT	1730	0.0	8.030342	1
ATTATAC	1235	0.0	8.004613	3
ATTACAC	1485	0.0	8.001244	3
GTATAGA	1580	0.0	7.9495783	1
AATACCG	300	1.8189894E-11	7.921351	5