Basic Statistics
Measure | Value |
---|---|
Filename | SRR1513184_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3215673 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCCTAAAGTGTGTATTTCTCATTT | 4597 | 0.14295607793454124 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 4430 | 0.13776276381336036 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 4116 | 0.12799808935796642 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 3759 | 0.1168962142605918 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGACC | 925 | 0.0 | 12.979563 | 4 |
TAGGCCG | 55 | 0.0030461128 | 12.103353 | 5 |
GGCGAGG | 1170 | 0.0 | 11.761413 | 19 |
AGGACGT | 2565 | 0.0 | 10.714719 | 5 |
GTCCTAG | 540 | 0.0 | 10.611923 | 1 |
TTAGGAC | 1725 | 0.0 | 10.605963 | 3 |
GTAGGAC | 2565 | 0.0 | 10.58755 | 3 |
GGACGTG | 2530 | 0.0 | 10.424608 | 6 |
TGGCGAG | 2605 | 0.0 | 10.346046 | 18 |
TGTAGGA | 2810 | 0.0 | 10.214502 | 2 |
CTAATAC | 330 | 0.0 | 10.106298 | 3 |
TACACCG | 170 | 1.5334081E-9 | 10.069175 | 5 |
GTCCTAA | 1465 | 0.0 | 9.974484 | 1 |
TAGGACG | 2800 | 0.0 | 9.937017 | 4 |
GTGTAGG | 500 | 0.0 | 9.93276 | 1 |
TCTATAC | 365 | 0.0 | 9.92039 | 3 |
GTCCTAC | 2280 | 0.0 | 9.885845 | 1 |
TTTAGGA | 1955 | 0.0 | 9.852844 | 2 |
AGGACCT | 1875 | 0.0 | 9.839449 | 5 |
GACGTGA | 1465 | 0.0 | 9.779318 | 7 |