Basic Statistics
Measure | Value |
---|---|
Filename | SRR1513077_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2180104 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAAC | 8954 | 0.4107143512419591 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 7202 | 0.33035121260270156 | No Hit |
GAGTACATGGGAAGCAGTGGTATCA | 3675 | 0.16856993978268928 | No Hit |
GCGTTGATACCACTGCTTCCCATGT | 2507 | 0.11499451402318421 | No Hit |
GTATCAACGCAGAGTACATGGGAAG | 2363 | 0.10838932454598496 | No Hit |
CATGTACTCTGCGTTGATACCACTG | 2307 | 0.10582063974929636 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 2269 | 0.10407760363725768 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGGTCGG | 55 | 1.9618664E-4 | 13.817231 | 10 |
TCGAACT | 185 | 0.0 | 11.296779 | 19 |
CCGACCA | 70 | 0.0014926766 | 10.856396 | 9 |
TTATACT | 310 | 0.0 | 10.72753 | 4 |
TAGGACG | 500 | 0.0 | 10.451679 | 4 |
TAGGACC | 400 | 0.0 | 10.451679 | 4 |
GTCCTAA | 365 | 0.0 | 10.422677 | 1 |
TGGCGAG | 465 | 0.0 | 10.418877 | 18 |
TCTAGAC | 275 | 0.0 | 10.364112 | 3 |
TTAGGAC | 405 | 0.0 | 10.321461 | 3 |
GTATAGG | 260 | 0.0 | 10.242285 | 1 |
GTCCTAC | 775 | 0.0 | 10.185645 | 1 |
GTATAAC | 215 | 1.8189894E-12 | 10.17423 | 1 |
AGGACGT | 495 | 0.0 | 10.17265 | 5 |
TTAGTAC | 150 | 2.4439942E-8 | 10.133799 | 3 |
GGCGAGA | 320 | 0.0 | 10.0932865 | 19 |
GCCTTAC | 170 | 1.5297701E-9 | 10.070146 | 1 |
GACCTCG | 85 | 6.599383E-4 | 10.058131 | 7 |
CTTAGAC | 200 | 2.5465852E-11 | 9.975458 | 3 |
CTCGAAC | 200 | 2.5465852E-11 | 9.974543 | 18 |