SRR1513036_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1513036_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2208884
Sequences flagged as poor quality	0
Sequence length	25
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACATGGGAAGCAGTGGTATCAAC	9762	0.4419426280420339	No Hit
CCCATGTACTCTGCGTTGATACCAC	8773	0.3971688870941163	No Hit
GTATCAACGCAGAGTACTTTTTTTT	3907	0.17687664902276445	No Hit
GAGTACATGGGAAGCAGTGGTATCA	3718	0.16832029205698443	No Hit
TATCAACGCAGAGTACTTTTTTTTT	2587	0.11711796545223743	No Hit
GTATCAACGCAGAGTACATGGGAAG	2541	0.11503546587326452	No Hit
CATGTACTCTGCGTTGATACCACTG	2466	0.1116400861249391	No Hit
GCGTTGATACCACTGCTTCCCATGT	2379	0.10770144561688165	No Hit
GGTATCAACGCAGAGTACTTTTTTT	2271	0.10281209877929308	No Hit
TATCAACGCAGAGTACATGGGAAGC	2228	0.10086541439025318	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACTG	85	3.8457765E-6	12.32228	5
TGGACCG	95	1.0120566E-6	12.027489	5
GGACCGT	80	2.8012637E-5	11.902203	6
ACTGCGC	85	5.3970027E-5	11.161737	8
TAGGACC	390	0.0	10.986649	4
GGCGAGG	370	0.0	10.767374	19
CTAATAC	190	9.094947E-12	10.524053	3
AAAGGCG	130	3.724199E-7	10.254206	5
CCGGACT	75	0.0025985236	10.156546	4
TGGCGAG	695	0.0	10.102918	18
AGGACCG	105	4.0043666E-5	9.97518	5
CTTACAC	355	0.0	9.92409	3
GTAGGAC	725	0.0	9.850099	3
GCACCGT	145	1.5646401E-7	9.850099	6
TATGGCG	700	0.0	9.762748	16
TCTAGAC	235	0.0	9.724352	3
CCTATAC	255	0.0	9.708463	3
TTAGGAC	600	0.0	9.680458	3
TAGGACG	690	0.0	9.659759	4
ATGGCGA	805	0.0	9.549865	17