Basic Statistics
Measure | Value |
---|---|
Filename | SRR1513019_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1957596 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAAC | 5284 | 0.26992290544116354 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 4480 | 0.22885212270560423 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 2871 | 0.14665947417138164 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 2238 | 0.11432389522659425 | No Hit |
GAGTACATGGGAAGCAGTGGTATCA | 2173 | 0.11100349612483884 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 2108 | 0.10768309702308343 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 2105 | 0.10752984783377163 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 65 | 5.4683696E-5 | 13.150131 | 5 |
ATGCCGT | 55 | 0.0030819145 | 12.084097 | 6 |
GTCTAGG | 220 | 0.0 | 11.691953 | 1 |
TGTCGAG | 75 | 2.0684603E-4 | 11.403483 | 18 |
CCCGGTC | 60 | 0.0059012817 | 11.077088 | 8 |
GGCCGCA | 70 | 0.0014987313 | 10.851025 | 7 |
TTAGACA | 195 | 1.8189894E-12 | 10.715196 | 4 |
TAGGACC | 375 | 0.0 | 10.637266 | 4 |
ATAGGAG | 190 | 9.094947E-12 | 10.497571 | 3 |
GTCCTAC | 1285 | 0.0 | 10.305228 | 1 |
TAGACAG | 270 | 0.0 | 10.200821 | 5 |
CCAACGA | 95 | 1.6536939E-4 | 9.994366 | 19 |
AAGGCGT | 215 | 1.0913936E-11 | 9.715454 | 6 |
GGACGTG | 1260 | 0.0 | 9.645355 | 6 |
TCCTACA | 1495 | 0.0 | 9.593098 | 2 |
GTCCTAG | 320 | 0.0 | 9.526776 | 1 |
CATTCGT | 80 | 0.0045373756 | 9.494647 | 19 |
TGGCGAG | 1175 | 0.0 | 9.381589 | 18 |
GTAGGAC | 1215 | 0.0 | 9.380546 | 3 |
GACGTGG | 680 | 0.0 | 9.3550205 | 7 |