Basic Statistics
Measure | Value |
---|---|
Filename | SRR1513012_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1818950 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCCTACAGTGGACATTTCTAAATT | 3994 | 0.21957722862090767 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 3701 | 0.2034690343329943 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 3618 | 0.1989059622309574 | No Hit |
GTACATGGGAAGCAGTGGTATCAAC | 3381 | 0.18587646719261114 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 3323 | 0.18268781439841666 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 2851 | 0.15673877786635146 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 2743 | 0.15080128645647214 | No Hit |
GTCCTACAGTGTGCATTTCTCATTT | 2120 | 0.11655075730503864 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACTGT | 45 | 6.7855633E-4 | 14.771319 | 6 |
GAACCGT | 80 | 1.2957207E-7 | 14.243772 | 6 |
CTCGACA | 50 | 0.0015006183 | 13.298941 | 4 |
TAGGACC | 610 | 0.0 | 12.9251995 | 4 |
TCCAACG | 105 | 1.9934305E-8 | 12.667051 | 18 |
GACGGCG | 55 | 0.0030668285 | 12.091941 | 13 |
GCGCCAC | 75 | 2.0725396E-4 | 11.400973 | 13 |
GCCCTAG | 145 | 1.1623342E-9 | 11.169304 | 1 |
TAACACT | 210 | 0.0 | 10.856278 | 4 |
CCATGCG | 70 | 0.0014963761 | 10.852995 | 9 |
AGGACCT | 1220 | 0.0 | 10.744751 | 5 |
GGACCTG | 1235 | 0.0 | 10.533855 | 6 |
GTCCTAA | 1230 | 0.0 | 10.456199 | 1 |
GGCGAGG | 905 | 0.0 | 10.387723 | 19 |
TGTAGGA | 2110 | 0.0 | 10.219565 | 2 |
TGGCGAG | 1980 | 0.0 | 10.172027 | 18 |
GTATTAA | 235 | 0.0 | 10.13485 | 1 |
GTAGGAC | 2050 | 0.0 | 10.101635 | 3 |
GGCCTAA | 85 | 6.4257334E-4 | 10.087157 | 1 |
GTCCTAC | 2110 | 0.0 | 10.068564 | 1 |