Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512994_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 757915 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 1803 | 0.23788947309394853 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 1507 | 0.1988349617041489 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 1352 | 0.17838411959124706 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 1210 | 0.1596485093974918 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 1119 | 0.14764188596346556 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 1071 | 0.14130872195430885 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 988 | 0.13035762585514205 | No Hit |
GTCCTACAGTGTGCATTTCTCATTT | 853 | 0.11254560207938885 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCGGTT | 40 | 2.7698348E-4 | 16.616283 | 11 |
CGGTTTC | 50 | 8.699385E-5 | 15.2010565 | 13 |
GGTATCA | 455 | 0.0 | 14.033528 | 1 |
GTCTTAG | 100 | 1.3802855E-7 | 12.389301 | 1 |
CGAAATC | 55 | 0.0030643533 | 12.091749 | 13 |
CCGGTTT | 55 | 0.0030643533 | 12.091749 | 12 |
CAACACT | 80 | 2.8617162E-5 | 11.875041 | 4 |
GTATTAG | 90 | 7.1874765E-6 | 11.648061 | 1 |
CCAGTAC | 90 | 7.4460477E-6 | 11.611151 | 3 |
TAGGACC | 220 | 0.0 | 11.227312 | 4 |
GTAGGAC | 720 | 0.0 | 11.215317 | 3 |
GTCCTAT | 85 | 5.1449835E-5 | 11.212037 | 1 |
ATACTGG | 85 | 5.342753E-5 | 11.170609 | 6 |
GGACATG | 255 | 0.0 | 11.170609 | 6 |
ATACTTA | 60 | 0.0058939173 | 11.077521 | 6 |
GCGAGGA | 180 | 3.6379788E-12 | 11.077521 | 9 |
GTATAAT | 105 | 3.3287488E-6 | 10.891693 | 1 |
TTACCCT | 70 | 0.0014898303 | 10.857181 | 4 |
TGTAGGA | 750 | 0.0 | 10.766705 | 2 |
GTCCTAG | 80 | 3.6568733E-4 | 10.72151 | 1 |