Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512930_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1932829 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 2935 | 0.1518499567214689 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 1937 | 0.10021579767273774 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGACC | 395 | 0.0 | 12.021942 | 4 |
TGTACCG | 80 | 2.8754508E-5 | 11.871668 | 5 |
GACCGAG | 65 | 8.0631167E-4 | 11.685699 | 7 |
CGCTTTC | 60 | 0.0058661695 | 11.085962 | 12 |
GGTATCA | 820 | 0.0 | 11.0413 | 1 |
GTAGGAC | 1070 | 0.0 | 11.006256 | 3 |
TGTAGGA | 1180 | 0.0 | 10.946079 | 2 |
AGGACGT | 1130 | 0.0 | 10.84209 | 5 |
GTGTACG | 80 | 3.6618827E-4 | 10.7216835 | 1 |
GGACGTG | 1170 | 0.0 | 10.711892 | 6 |
GACGTGG | 560 | 0.0 | 10.68146 | 7 |
GGCGAGG | 590 | 0.0 | 10.621662 | 19 |
TAGGACG | 1225 | 0.0 | 10.156333 | 4 |
GTCCTAC | 1135 | 0.0 | 10.076179 | 1 |
CTGTAGG | 1225 | 0.0 | 10.036079 | 1 |
GTATCAA | 1695 | 0.0 | 10.00831 | 1 |
ACCGAGT | 95 | 1.6528352E-4 | 9.994866 | 8 |
ATAGGAC | 220 | 1.8189894E-12 | 9.929031 | 3 |
ACGTGGA | 635 | 0.0 | 9.868946 | 8 |
GTACTAA | 145 | 1.543649E-7 | 9.859019 | 1 |