Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512869_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2032780 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 6816 | 0.3353043615147729 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 5068 | 0.24931374767559697 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 4086 | 0.2010055195348242 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 2394 | 0.11776975373626265 | No Hit |
GTACTGGTTCACTATCGGTCAGTCA | 2301 | 0.11319473824024243 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCCGTAC | 220 | 0.0 | 13.806875 | 16 |
GGTATCA | 1790 | 0.0 | 13.393009 | 1 |
CCCCGTA | 230 | 0.0 | 13.206575 | 15 |
TACTAGC | 120 | 7.2577677E-10 | 12.682822 | 2 |
TAGAACC | 120 | 7.2759576E-10 | 12.680633 | 4 |
AACCCGT | 60 | 4.0559546E-4 | 12.68032 | 6 |
CCGTACA | 250 | 0.0 | 12.149453 | 17 |
CATCTAG | 115 | 6.9412636E-8 | 11.581395 | 1 |
ACTAGAC | 85 | 5.255809E-5 | 11.190724 | 3 |
TGTGCGA | 85 | 5.3422315E-5 | 11.172821 | 10 |
GTCTTAT | 145 | 1.1896191E-9 | 11.153511 | 1 |
TCTATAC | 145 | 1.193257E-9 | 11.152136 | 3 |
TAGGACC | 410 | 0.0 | 11.134214 | 4 |
GTCCTAC | 1055 | 0.0 | 11.091323 | 1 |
CATTGCG | 60 | 0.0058834604 | 11.081624 | 9 |
TATGCGA | 115 | 8.9159767E-7 | 10.730079 | 12 |
ATGCGAA | 115 | 8.9159767E-7 | 10.730079 | 13 |
ACCGTAT | 135 | 5.6816134E-8 | 10.556526 | 8 |
AGGACCT | 865 | 0.0 | 10.445031 | 5 |
ACGAAAT | 100 | 2.4217987E-5 | 10.441192 | 12 |