Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512733_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1589455 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 4504 | 0.28336756938699115 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 2570 | 0.1616906423900016 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 2394 | 0.1506176645453945 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 2392 | 0.15049183525170576 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 2170 | 0.13652478365225817 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 2086 | 0.13123995331733204 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 1787 | 0.11242847391086883 | No Hit |
GTACATGGGAAGCAGTGGTATCAAC | 1630 | 0.10255087435630451 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAGACG | 40 | 0.005292535 | 14.244563 | 4 |
TCCAACG | 80 | 1.3009958E-7 | 14.238705 | 18 |
TAGGACC | 495 | 0.0 | 13.621064 | 4 |
CGTGCAT | 75 | 1.4916934E-5 | 12.655825 | 10 |
CCGGTCC | 80 | 2.9274304E-5 | 11.85059 | 9 |
GTAGGAC | 1360 | 0.0 | 11.801017 | 3 |
TGTAGGA | 1445 | 0.0 | 11.764049 | 2 |
TATGTCG | 60 | 0.005866115 | 11.0857725 | 16 |
CTGTAGG | 1410 | 0.0 | 10.910717 | 1 |
CCCGGTC | 70 | 0.0015401924 | 10.815344 | 8 |
GTAGAAC | 425 | 0.0 | 10.725657 | 3 |
CTTACAC | 160 | 5.475158E-10 | 10.683761 | 3 |
TAAGCCC | 80 | 3.784067E-4 | 10.683423 | 4 |
GTCCTAC | 1250 | 0.0 | 10.615037 | 1 |
AGGACGT | 1290 | 0.0 | 10.60027 | 5 |
TAGGACG | 1295 | 0.0 | 10.486346 | 4 |
GGACGTG | 1280 | 0.0 | 10.460189 | 6 |
TATACTG | 220 | 0.0 | 10.359355 | 5 |
GTGTAGG | 270 | 0.0 | 10.327296 | 1 |
GTACTAA | 140 | 8.119969E-8 | 10.30186 | 1 |