Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512727_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1200666 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 5817 | 0.48448111298229485 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 4364 | 0.3634649436229559 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 3715 | 0.30941160988984445 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 1883 | 0.15682962622411228 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 1778 | 0.14808447978038855 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 1351 | 0.11252088424257871 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 1299 | 0.10818995457521077 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 1210 | 0.10077740187529255 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACTATAC | 55 | 1.1412516E-5 | 15.526118 | 3 |
GAACCGC | 40 | 0.0053219097 | 14.232276 | 6 |
GGTATCA | 1050 | 0.0 | 13.837687 | 1 |
TAGGACC | 290 | 0.0 | 12.759972 | 4 |
GATCAAC | 125 | 8.385541E-10 | 12.566114 | 1 |
CTAGATA | 55 | 0.0030964552 | 12.07587 | 4 |
CCCGTTT | 65 | 8.1365975E-4 | 11.672384 | 12 |
GTGCGCC | 90 | 7.6028246E-6 | 11.59084 | 11 |
GCTCAAG | 105 | 2.3350913E-6 | 11.219746 | 1 |
TGCGCCA | 85 | 5.4134456E-5 | 11.157426 | 12 |
GTCCTAA | 345 | 0.0 | 11.097791 | 1 |
CGAAATC | 60 | 0.0059271213 | 11.070011 | 13 |
GTACCGT | 60 | 0.0059289704 | 11.069547 | 6 |
TTAATCA | 95 | 1.37822935E-5 | 10.986318 | 4 |
GTTATAT | 90 | 6.812584E-5 | 10.908087 | 1 |
TTTACAC | 115 | 8.95041E-7 | 10.725773 | 3 |
GTCTAGG | 65 | 0.008340836 | 10.572453 | 1 |
GACCGTG | 90 | 9.63065E-5 | 10.542426 | 7 |
TAACACC | 90 | 9.63065E-5 | 10.542426 | 4 |
GATATAT | 85 | 4.8702973E-4 | 10.394764 | 1 |