Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512649_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1898227 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 6240 | 0.3287278075804422 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 4297 | 0.2263691328803141 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 3801 | 0.20023948663674052 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCCTAA | 80 | 1.373146E-6 | 13.506898 | 1 |
GGTATCA | 1325 | 0.0 | 13.048174 | 1 |
TAGGACC | 350 | 0.0 | 11.653922 | 4 |
GGCGAGG | 475 | 0.0 | 11.373863 | 19 |
GTCCTAA | 610 | 0.0 | 11.272523 | 1 |
GTCTTAG | 160 | 3.0377123E-10 | 11.051098 | 1 |
GTCCTAT | 210 | 0.0 | 10.75874 | 1 |
TGGCGAG | 990 | 0.0 | 10.624283 | 18 |
TTAGACT | 120 | 1.5535024E-6 | 10.27623 | 4 |
TCTATAC | 195 | 1.6370905E-11 | 10.215424 | 3 |
GCACTCG | 75 | 0.002677665 | 10.119742 | 13 |
ATTAGAC | 75 | 0.0026811974 | 10.1181345 | 3 |
TGCGTTG | 225 | 0.0 | 10.116795 | 12 |
TAGGACA | 415 | 0.0 | 10.057181 | 4 |
TATGGCG | 1105 | 0.0 | 10.047994 | 16 |
TTAGGAC | 680 | 0.0 | 10.0437355 | 3 |
GTATCAA | 2740 | 0.0 | 9.966602 | 1 |
GTAGGAC | 1135 | 0.0 | 9.945413 | 3 |
TGTAGGA | 1155 | 0.0 | 9.937453 | 2 |
GTCCAGA | 320 | 0.0 | 9.823198 | 1 |