Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512642_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1519256 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 7646 | 0.503272654509839 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 5682 | 0.37399885206969724 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 5613 | 0.36945715534445805 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 3333 | 0.2193836983365542 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 3251 | 0.21398631961960327 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 3028 | 0.19930808237716355 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 2905 | 0.19121201430173715 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 2651 | 0.1744933046175233 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 1942 | 0.1278257252233988 | No Hit |
CTGAAGGACCTGGAATATGGCGAGA | 1915 | 0.12604853954830522 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 1777 | 0.11696514609782682 | No Hit |
TTTCTAAATTTTCCACCTTTTTCAG | 1523 | 0.10024643641361299 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGACC | 575 | 0.0 | 14.214583 | 4 |
TCGCAGT | 50 | 0.0015022832 | 13.296751 | 14 |
CGAACCG | 70 | 1.0926883E-4 | 12.212106 | 12 |
AAGGCGA | 55 | 0.0030770432 | 12.086364 | 17 |
GAACCGG | 65 | 8.0374785E-4 | 11.689836 | 13 |
GGTATCA | 1740 | 0.0 | 11.536669 | 1 |
GATATAC | 340 | 0.0 | 11.472343 | 1 |
AGGACCT | 1220 | 0.0 | 11.373938 | 5 |
AATCCCG | 170 | 1.2732926E-11 | 11.17227 | 19 |
GGCGAGG | 860 | 0.0 | 11.152782 | 19 |
ACTGTTC | 405 | 0.0 | 11.02345 | 8 |
CCACCTT | 570 | 0.0 | 10.997675 | 13 |
GGACCTG | 1260 | 0.0 | 10.630105 | 6 |
TAAGACT | 170 | 1.382432E-10 | 10.622046 | 4 |
TAGAAAT | 570 | 0.0 | 10.504351 | 4 |
AAATGTC | 565 | 0.0 | 10.423605 | 7 |
CACCTTT | 650 | 0.0 | 10.374388 | 14 |
AATGCCG | 110 | 6.070939E-6 | 10.35974 | 18 |
TTAGGAC | 1140 | 0.0 | 10.336933 | 3 |
TTTAGAA | 650 | 0.0 | 10.236019 | 2 |