Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512568_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1650361 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCCTACAGTGGACATTTCTAAATT | 5080 | 0.30781144246622405 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 4969 | 0.3010856412627298 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 4616 | 0.27969638157954535 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 4044 | 0.24503729790027756 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 3700 | 0.22419337344980883 | No Hit |
GTCCTACAGTGTGCATTTCTCATTT | 2682 | 0.16250989934929388 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 2380 | 0.14421087265149868 | No Hit |
CTGAAGGACCTGGAATATGGCGAGA | 2244 | 0.13597025135712731 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 2205 | 0.13360713201535906 | No Hit |
GTACATGGGAAGCAGTGGTATCAAC | 1966 | 0.11912545194657412 | No Hit |
GTCCTTCAGTGTGCATTTCTCATTT | 1942 | 0.11767122465933212 | No Hit |
ATTTAGAAATGTCCACTGTAGGACG | 1922 | 0.11645936858663043 | No Hit |
CTGTAGGACCTGGAATATGGCGAGA | 1805 | 0.10937001056132568 | No Hit |
TTTCTAAATTTTCCACCTTTTTCAG | 1677 | 0.10161413169603498 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGCTC | 35 | 0.002250034 | 16.19794 | 8 |
ACTCCGT | 40 | 0.005369108 | 14.213797 | 6 |
TAGGACC | 725 | 0.0 | 12.547352 | 4 |
AAATGTC | 655 | 0.0 | 11.573576 | 7 |
CATTTCG | 75 | 2.117521E-4 | 11.374504 | 14 |
ATAATAC | 170 | 1.2732926E-11 | 11.148076 | 3 |
GTCCTAA | 1425 | 0.0 | 10.930289 | 1 |
GTCCTAT | 230 | 0.0 | 10.922624 | 1 |
GGCGAGG | 1165 | 0.0 | 10.883027 | 19 |
AATGTCC | 705 | 0.0 | 10.588015 | 8 |
GAAATGT | 735 | 0.0 | 10.571713 | 6 |
TAGGACA | 730 | 0.0 | 10.514316 | 4 |
GTCCTAC | 2425 | 0.0 | 10.401041 | 1 |
AGGACCT | 1550 | 0.0 | 10.33175 | 5 |
TGTAGGA | 2725 | 0.0 | 10.327824 | 2 |
TAGAAAT | 790 | 0.0 | 10.315498 | 4 |
GGACCTG | 1495 | 0.0 | 10.268161 | 6 |
TCCAACG | 120 | 1.6068661E-6 | 10.248966 | 18 |
GTCCTAG | 315 | 0.0 | 10.208319 | 1 |
CCTTATA | 140 | 1.0052281E-7 | 10.152712 | 2 |