Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512503_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1479425 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 4661 | 0.3150548354935194 | No Hit |
GTACATGGGAAGCAGTGGTATCAAC | 3428 | 0.23171164472683645 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 2990 | 0.2021055477634892 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 2711 | 0.1832468695608091 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 2568 | 0.173580952059077 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGGACCG | 50 | 0.0015263793 | 13.268654 | 5 |
GTCCTAC | 705 | 0.0 | 11.681548 | 1 |
GTGTACG | 60 | 0.004248333 | 11.575991 | 1 |
ACGAAAT | 110 | 5.1049756E-7 | 11.203476 | 12 |
CGAAATC | 85 | 5.415891E-5 | 11.157331 | 13 |
TAGACAC | 130 | 3.3796823E-8 | 10.935703 | 5 |
GTCTATC | 100 | 1.4826084E-5 | 10.914507 | 1 |
TGTAGGA | 910 | 0.0 | 10.727769 | 2 |
CGTGCAC | 80 | 3.8498928E-4 | 10.663398 | 10 |
AGGACGT | 980 | 0.0 | 10.444713 | 5 |
GTAGGAC | 885 | 0.0 | 10.387888 | 3 |
GTCTAGT | 115 | 6.112412E-6 | 10.353682 | 1 |
TAGGACC | 285 | 0.0 | 10.308978 | 4 |
GACGTGG | 535 | 0.0 | 10.274791 | 7 |
TAGGACT | 195 | 1.6370905E-11 | 10.206656 | 4 |
GGACGTG | 960 | 0.0 | 10.168685 | 6 |
ACGTGGA | 560 | 0.0 | 10.126712 | 8 |
TGTACCG | 75 | 0.002699754 | 10.10945 | 5 |
ACCGTAT | 75 | 0.0027619964 | 10.081704 | 8 |
AGGACCG | 85 | 6.73705E-4 | 10.035116 | 5 |