SRR1512477_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1512477_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1598853
Sequences flagged as poor quality	0
Sequence length	25
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACATGGGAAGCAGTGGTATCAAC	6262	0.39165576822884907	No Hit
GTATCAACGCAGAGTACTTTTTTTT	4911	0.30715769367165086	No Hit
CCCATGTACTCTGCGTTGATACCAC	4315	0.26988097092102903	No Hit
GGTATCAACGCAGAGTACTTTTTTT	3105	0.19420171835684708	No Hit
TATCAACGCAGAGTACTTTTTTTTT	2932	0.18338146158527394	No Hit
GTCCTAAAGTGTGTATTTCTCATTT	2774	0.17349937736614937	No Hit
GTCCTACAGTGGACATTTCTAAATT	2765	0.17293647383468022	No Hit
GAGTACATGGGAAGCAGTGGTATCA	2733	0.17093503905612337	No Hit
CTGTAGGACGTGGAATATGGCAAGA	2540	0.1588638855479522	No Hit
CTTTAGGACGTGAAATATGGCGAGG	2324	0.14535420079269326	No Hit
GTACTTTTTTTTTTTTTTTTTTTTT	1698	0.10620113293717433	No Hit
GTCCTACAGTGTGCATTTCTCATTT	1679	0.1050127810374062	No Hit
GTATCAACGCAGAGTACATGGGAAG	1611	0.10075973213297283	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCTC	40	0.005380206	14.209335	19
TAGGACC	595	0.0	13.061641	4
GTCTTAG	195	0.0	11.187082	1
AGGACCT	1205	0.0	11.011382	5
TCCCGTT	70	0.0015210211	10.831605	11
ACGGGGA	70	0.0015532128	10.80444	8
GGACCTG	1195	0.0	10.786284	6
CACCTTT	530	0.0	10.739546	14
ATTTAGA	625	0.0	10.312455	1
TCTAGTA	120	1.5706592E-6	10.267137	2
AATGTCC	550	0.0	10.141439	8
TTTAGAA	705	0.0	10.082294	2
TGTAGGA	1985	0.0	10.074167	2
GGACGTG	1815	0.0	10.025949	6
AGGACGT	1835	0.0	9.968323	5
TGAGTTA	315	0.0	9.931155	12
TTTCCAC	490	0.0	9.864187	10
TTCCACC	570	0.0	9.810204	11
AAATGTC	590	0.0	9.79893	7
GTAGGAC	1925	0.0	9.797679	3