Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512466_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2977310 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 6692 | 0.22476665177626784 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 5413 | 0.18180841094813774 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 5373 | 0.18046491631707817 | No Hit |
GTACATGGGAAGCAGTGGTATCAAC | 5238 | 0.1759306219372521 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 4595 | 0.15433394574296933 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 4454 | 0.1495981271684843 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 4298 | 0.14435849810735193 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 4288 | 0.14402262444958702 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 4093 | 0.13747308812317158 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGACC | 1095 | 0.0 | 12.4092455 | 4 |
TCCAACG | 205 | 0.0 | 11.1179695 | 18 |
GTCCTAC | 2830 | 0.0 | 10.453749 | 1 |
GATATAC | 610 | 0.0 | 10.448238 | 1 |
AGGACGT | 2720 | 0.0 | 10.201218 | 5 |
TGTAGGA | 3065 | 0.0 | 10.13739 | 2 |
TAAAGCG | 75 | 0.0026430045 | 10.136004 | 5 |
CAGCGCG | 75 | 0.002649644 | 10.132939 | 9 |
CTAGGAC | 395 | 0.0 | 10.103249 | 3 |
GTAGGAC | 2950 | 0.0 | 10.0172205 | 3 |
TTAGGAC | 1660 | 0.0 | 10.017027 | 3 |
TAGGACG | 2885 | 0.0 | 9.979764 | 4 |
GGACCTG | 1885 | 0.0 | 9.978224 | 6 |
GGACGTG | 2730 | 0.0 | 9.951827 | 6 |
TCCTACA | 3195 | 0.0 | 9.903353 | 2 |
TGGCGAG | 2785 | 0.0 | 9.88874 | 18 |
CTGTAGG | 3075 | 0.0 | 9.868329 | 1 |
GGCGAGG | 1250 | 0.0 | 9.800325 | 19 |
TTTAGGA | 1860 | 0.0 | 9.757292 | 2 |
ATAGGAC | 480 | 0.0 | 9.6998205 | 3 |