Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512378_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2025258 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 7973 | 0.3936782375381309 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 6694 | 0.3305257898006081 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 6625 | 0.32711881646684027 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 6347 | 0.3133921702815148 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 5919 | 0.2922590603271287 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 5470 | 0.2700890454450741 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 5285 | 0.2609544067965662 | No Hit |
CTGAAGGACCTGGAATATGGCGAGA | 3402 | 0.16797859828229292 | No Hit |
GTCCTACAGTGTGCATTTCTCATTT | 3365 | 0.16615167055259134 | No Hit |
ATTTAGAAATGTCCACTGTAGGACG | 2705 | 0.13356322996872497 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 2588 | 0.12778618822885776 | No Hit |
CTGTAGGACCTGGAATATGGCGAGA | 2488 | 0.12284854571615073 | No Hit |
TTTCTAAATTTTCCACCTTTTTCAG | 2477 | 0.12230540503975296 | No Hit |
GTCCTTCAGTGTGCATTTCTCATTT | 2421 | 0.11954032523263704 | No Hit |
GAATATGGCAAGAAAACTGAAAATC | 2364 | 0.11672586900039403 | No Hit |
GGAATATGGCGAGAAAACTGAAAAT | 2067 | 0.10206107073765416 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 2041 | 0.10077728368435035 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1465 | 0.0 | 12.858215 | 1 |
TAGGACC | 1115 | 0.0 | 12.363005 | 4 |
AATGTCC | 860 | 0.0 | 11.928945 | 8 |
ACCGTGC | 65 | 8.0325303E-4 | 11.691046 | 8 |
GGCGAGG | 1505 | 0.0 | 11.545401 | 19 |
TAGAAAT | 1005 | 0.0 | 11.540502 | 4 |
AAATGTC | 900 | 0.0 | 11.504314 | 7 |
GGACCTG | 2105 | 0.0 | 11.10094 | 6 |
TTTAGAA | 1090 | 0.0 | 10.990239 | 2 |
AGGACCT | 2150 | 0.0 | 10.966438 | 5 |
GAAATGT | 975 | 0.0 | 10.911643 | 6 |
ATGTCCA | 945 | 0.0 | 10.855971 | 9 |
ACCTTTT | 930 | 0.0 | 10.720147 | 15 |
CACCTTT | 935 | 0.0 | 10.662821 | 14 |
TGTCCAC | 1070 | 0.0 | 10.653055 | 10 |
ACGGTAC | 125 | 2.2190943E-7 | 10.6475315 | 3 |
TTAGGAC | 2200 | 0.0 | 10.630246 | 3 |
GTATCAA | 3010 | 0.0 | 10.461998 | 1 |
TTAGACA | 210 | 0.0 | 10.412126 | 4 |
GCCCTAT | 120 | 1.4959987E-6 | 10.306595 | 1 |