Basic Statistics
Measure | Value |
---|---|
Filename | SRR1512318_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2008669 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 8224 | 0.40942534583846313 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 7484 | 0.37258503018665595 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 7265 | 0.3616822881221346 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 6477 | 0.32245233037399396 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 6113 | 0.30433087781013196 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 5339 | 0.2657978990067552 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 5219 | 0.25982379376592163 | No Hit |
GTCCTACAGTGTGCATTTCTCATTT | 3785 | 0.18843323613796 | No Hit |
CTGAAGGACCTGGAATATGGCGAGA | 3436 | 0.17105854672920226 | No Hit |
CTGTAGGACCTGGAATATGGCGAGA | 2899 | 0.1443244257764719 | No Hit |
GTCCTTCAGTGTGCATTTCTCATTT | 2768 | 0.1378026942218952 | No Hit |
ATTTAGAAATGTCCACTGTAGGACG | 2765 | 0.13765334159087436 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 2616 | 0.13023549425017264 | No Hit |
TTTCTAAATTTTCCACCTTTTTCAG | 2493 | 0.12411203637831818 | No Hit |
GAATATGGCAAGAAAACTGAAAATC | 2311 | 0.11505131009638722 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 2114 | 0.10524382065935205 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCACCGT | 35 | 0.0021640414 | 16.292978 | 6 |
CCACGAC | 40 | 0.0052720555 | 14.253159 | 3 |
CCAACGA | 85 | 2.7209717E-7 | 13.403383 | 19 |
CGAGACA | 50 | 0.00149703 | 13.303279 | 4 |
TAGGACC | 1150 | 0.0 | 13.1380205 | 4 |
GGTATCA | 1340 | 0.0 | 12.916787 | 1 |
GTCGAGG | 130 | 2.0008883E-10 | 12.415314 | 19 |
TTCGCAT | 55 | 0.003083385 | 12.083353 | 17 |
TCCAACG | 155 | 2.5465852E-11 | 11.637884 | 18 |
CCACCTT | 895 | 0.0 | 11.249406 | 13 |
TTATACC | 145 | 1.2132659E-9 | 11.140677 | 4 |
CACCTTT | 910 | 0.0 | 10.955234 | 14 |
ACCTTTT | 925 | 0.0 | 10.879953 | 15 |
TAAGACG | 70 | 0.0014886658 | 10.859819 | 4 |
GTGGTAT | 510 | 0.0 | 10.815478 | 1 |
TGTAGGA | 3950 | 0.0 | 10.680847 | 2 |
GGCGAGG | 1550 | 0.0 | 10.657851 | 19 |
ATAGGAC | 295 | 0.0 | 10.629474 | 3 |
GTCCTAA | 1825 | 0.0 | 10.578426 | 1 |
AGGACGT | 4145 | 0.0 | 10.523021 | 5 |