FastQCFastQC Report
Thu 26 May 2016
SRR1512190_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1512190_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13259
Sequences flagged as poor quality0
Sequence length25
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTT510.38464439248812127No Hit
TATCAACGCAGAGTACTTTTTTTTT280.2111773135228901No Hit
GGTATCAACGCAGAGTACTTTTTTT210.1583829851421676No Hit
GTCCTACAGTGGACATTTCTAAATT150.11313070367297685No Hit
GTCCTAAAGTGTGTATTTCTCATTT140.10558865676144505No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)