FastQCFastQC Report
Thu 26 May 2016
SRR1512190_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1512190_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13259
Sequences flagged as poor quality0
Sequence length25
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTT590.4449807677803756No Hit
TATCAACGCAGAGTACTTTTTTTTT490.3695602986650577No Hit
GGTATCAACGCAGAGTACTTTTTTT420.3167659702843352No Hit
ACGCAGAGTACTTTTTTTTTTTTTT260.19609321969982652No Hit
GTCCTAAAGTGTGTATTTCTCATTT200.1508409382306358No Hit
CTGTAGGACGTGGAATATGGCAAGA160.12067275058450865No Hit
GTCCTACAGTGGACATTTCTAAATT150.11313070367297685No Hit
GTCCTACAGTGTGCATTTCTCATTT140.10558865676144505No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)