SRR1512138_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1512138_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	849724
Sequences flagged as poor quality	0
Sequence length	25
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTT	3422	0.40271900052252263	No Hit
TATCAACGCAGAGTACTTTTTTTTT	2818	0.33163709628067467	No Hit
GGTATCAACGCAGAGTACTTTTTTT	2603	0.306334762817103	No Hit
CTGTAGGACGTGGAATATGGCAAGA	1388	0.16334715742994194	No Hit
ACGCAGAGTACTTTTTTTTTTTTTT	1335	0.15710983801799172	No Hit
CTTTAGGACGTGAAATATGGCGAGG	1235	0.14534131082563279	No Hit
GTCCTAAAGTGTGTATTTCTCATTT	1062	0.12498175878285184	No Hit
GTCCTACAGTGGACATTTCTAAATT	970	0.11415471376588163	No Hit
GTACTTTTTTTTTTTTTTTTTTTTT	936	0.11015341452047958	No Hit
GAGTACTTTTTTTTTTTTTTTTTTT	853	0.10038553695082168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	825	0.0	15.02168	1
CGTGCGC	65	3.3785127E-6	14.610903	10
GCGTGCG	65	5.4625103E-5	13.149813	9
TTTGGAC	95	7.3554475E-8	13.002135	3
AGGCGTG	75	1.4804829E-5	12.663528	7
TCCACCT	285	0.0	12.329552	12
ATTACTC	55	0.0030627067	12.092895	3
CTAGTAC	55	0.0030627067	12.092895	3
ACTGATC	55	0.0030721733	12.0879135	8
ACGCCAC	55	0.003073528	12.087202	10
AGGCCGT	65	8.033539E-4	11.68941	6
CCACCTT	270	0.0	11.607552	13
GGCGTGC	60	0.0058827847	11.080587	8
GCGCCAC	60	0.005885362	11.079935	13
TGCGCCA	60	0.005885362	11.079935	12
CACCTTT	285	0.0	10.996628	14
AAGGCGT	105	3.4698642E-6	10.854453	6
ACGAAAT	80	3.777573E-4	10.684223	12
TAGAAAT	330	0.0	10.653264	4
GCACTGT	90	9.5264186E-5	10.55294	6