FastQCFastQC Report
Thu 26 May 2016
SRR1511948_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1511948_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1045611
Sequences flagged as poor quality0
Sequence length25
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTT30990.29638173278590224No Hit
TATCAACGCAGAGTACTTTTTTTTT18220.1742521836514727No Hit
GGTATCAACGCAGAGTACTTTTTTT18060.1727219778674861No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA5900.013.5890721
TACACCG500.001495791513.3037515
GTACTGA1209.32414E-911.9308821
TAGGACT1157.0349415E-811.568484
GTCTAGG1001.8215287E-611.4536461
GTATCAA13000.011.0131211
CTAGGAC1053.450381E-610.8602073
ATTAGAC700.001487190810.8602063
GTACTAA750.002545216610.1810191
TATGACC856.5720297E-410.0616614
GAACTTA856.60391E-410.0563676
GTATAAC1159.694577E-69.9596921
GTGGTAT1553.7694917E-89.8525991
GGACTGT1651.0233634E-89.7854886
ATACTGT2350.09.6997596
GTCCTAA1106.486908E-59.5447051
GTGCTAA900.00106607989.5447051
GTGTAAG1606.1563696E-89.5447051
GCATTAT1002.6260654E-49.5447041
CTAAACT1304.2166703E-69.5026814