Basic Statistics
Measure | Value |
---|---|
Filename | SRR1511945_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1584856 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCCTACAGTGGACATTTCTAAATT | 4036 | 0.25466036031033734 | No Hit |
CTGTAGGACGTGGAATATGGCAAGA | 3780 | 0.23850747323416133 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 3620 | 0.22841191881155135 | No Hit |
CTTTAGGACGTGAAATATGGCGAGG | 3281 | 0.20702196287864638 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 2961 | 0.1868308540334264 | No Hit |
CTGAAGGACCTGGAATATGGCGAGA | 1840 | 0.11609887586001505 | No Hit |
GTCCTACAGTGTGCATTTCTCATTT | 1763 | 0.11124039029413399 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 1711 | 0.10795933510678574 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 1688 | 0.10650809915853554 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCGCA | 35 | 0.0021722482 | 16.283442 | 7 |
CGTTAGG | 45 | 6.700266E-4 | 14.795789 | 1 |
TAGGACC | 585 | 0.0 | 14.288605 | 4 |
CGGTAGG | 75 | 9.54109E-7 | 13.9503145 | 1 |
TCCAACG | 135 | 1.8189894E-12 | 13.368505 | 18 |
GGTATCA | 740 | 0.0 | 12.467879 | 1 |
TCGAACT | 95 | 1.041557E-6 | 11.998326 | 19 |
AATCCCG | 280 | 0.0 | 11.873343 | 19 |
AGGACCT | 1295 | 0.0 | 11.662465 | 5 |
GCGCCAC | 60 | 0.0058818487 | 11.081787 | 13 |
GGACCTG | 1300 | 0.0 | 10.7408085 | 6 |
GTCTAAT | 80 | 3.7285555E-4 | 10.700525 | 1 |
CCGTTTC | 125 | 2.2437962E-7 | 10.638515 | 13 |
AAATCCC | 350 | 0.0 | 10.584237 | 18 |
GTATCAA | 1525 | 0.0 | 10.5407 | 1 |
GTGTAGA | 280 | 0.0 | 10.530676 | 1 |
GGCGAGG | 885 | 0.0 | 10.518308 | 19 |
GACGTGA | 1120 | 0.0 | 10.51639 | 7 |
GGACGTG | 2045 | 0.0 | 10.450865 | 6 |
CTAGTAC | 100 | 2.4021496E-5 | 10.448543 | 3 |