Basic Statistics
Measure | Value |
---|---|
Filename | SRR1511920_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1355128 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 1675 | 0.12360455986445561 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGCG | 40 | 0.0052826544 | 14.248368 | 9 |
ATGACCG | 40 | 0.0052826544 | 14.248368 | 5 |
GGTATCA | 545 | 0.0 | 12.737412 | 1 |
CGTCTCG | 65 | 8.0299744E-4 | 11.6909685 | 17 |
ACTAGGC | 65 | 8.0299744E-4 | 11.6909685 | 8 |
CTAGAAC | 140 | 6.8030204E-10 | 11.534392 | 3 |
ATAAGAC | 110 | 4.973135E-7 | 11.2259865 | 3 |
CTAGATA | 85 | 5.327676E-5 | 11.17519 | 4 |
GCACCGT | 85 | 5.327676E-5 | 11.17519 | 6 |
AACCGTC | 70 | 0.0014926149 | 10.855899 | 7 |
GGCGTGC | 70 | 0.0014926149 | 10.855899 | 8 |
CCTACAC | 140 | 8.358256E-9 | 10.855899 | 3 |
GTGTAGC | 230 | 0.0 | 10.336346 | 1 |
CTAAGAC | 140 | 9.6953954E-8 | 10.177405 | 3 |
ATTATAC | 150 | 2.4463588E-8 | 10.132173 | 3 |
CCCTTAT | 85 | 6.531873E-4 | 10.068816 | 1 |
TACACGG | 85 | 6.5987307E-4 | 10.057671 | 5 |
TTTACCC | 95 | 1.6453708E-4 | 9.998855 | 3 |
GACGTGA | 95 | 1.6453708E-4 | 9.998855 | 7 |
GTCCTAC | 220 | 1.8189894E-12 | 9.941685 | 1 |