Basic Statistics
Measure | Value |
---|---|
Filename | SRR1295294_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4059686 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 14084 | 0.3469233827443797 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 11689 | 0.28792867231603625 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 8485 | 0.2090063123108536 | No Hit |
GTACATAAGCAGTGGTATCAACGCA | 8263 | 0.2035379090895207 | No Hit |
GTGGTATCAACGCAGAGTACATGGG | 6375 | 0.1570318492612483 | No Hit |
GCTTATGTACTCTGCGTTGATACCA | 5881 | 0.14486342047143547 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 5577 | 0.13737515660078145 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTAT | 50 | 0.0014755531 | 13.329355 | 1 |
AGCGTCA | 330 | 0.0 | 12.10086 | 3 |
CAGCGTC | 355 | 0.0 | 11.248687 | 2 |
TCGAGCG | 60 | 0.005896921 | 11.078656 | 9 |
GCAGCGT | 370 | 0.0 | 9.778293 | 1 |
CGTAGAC | 90 | 0.001105975 | 9.507818 | 3 |
TGAACCG | 100 | 2.7349472E-4 | 9.507702 | 5 |
GTACCGT | 110 | 6.872728E-5 | 9.496108 | 6 |
CGCCAAA | 115 | 1.1165834E-4 | 9.083121 | 17 |
GTCCTAA | 350 | 0.0 | 8.976913 | 1 |
GTACGTA | 85 | 0.0073057376 | 8.960911 | 1 |
CCGCTTG | 85 | 0.0074648657 | 8.937403 | 14 |
GCGTTCA | 85 | 0.0074648657 | 8.937403 | 9 |
TATACTG | 935 | 0.0 | 8.846738 | 5 |
TACACGC | 110 | 7.0911896E-4 | 8.643364 | 5 |
TGTACCG | 155 | 4.1653875E-6 | 8.587601 | 5 |
GGACAAT | 365 | 0.0 | 8.585522 | 6 |
GCTTATG | 1465 | 0.0 | 8.57862 | 1 |
GGTATCA | 6395 | 0.0 | 8.560682 | 1 |
CTACACG | 145 | 1.6731909E-5 | 8.52425 | 4 |