Basic Statistics
Measure | Value |
---|---|
Filename | SRR1295291_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3631120 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 5378 | 0.14810857256163387 | No Hit |
GTGGTATCAACGCAGAGTACATGGG | 5343 | 0.14714468263235586 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 4478 | 0.12332283152305624 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACGAC | 80 | 2.8633242E-5 | 11.877231 | 3 |
TACACCG | 100 | 2.3958248E-5 | 10.451963 | 5 |
ACCGAGC | 75 | 0.0026521694 | 10.131886 | 8 |
GGTATCA | 3650 | 0.0 | 9.794483 | 1 |
GCTACGA | 80 | 0.004512447 | 9.501391 | 2 |
ACCGTCA | 110 | 6.852152E-5 | 9.498643 | 8 |
ATACCGT | 95 | 0.0018272818 | 8.99859 | 6 |
CTTGGAC | 410 | 0.0 | 8.806533 | 3 |
GACTGCG | 120 | 1.7678985E-4 | 8.706969 | 7 |
GCTTATG | 605 | 0.0 | 8.643584 | 1 |
GGACCGT | 110 | 7.159271E-4 | 8.635011 | 6 |
TCTATAC | 375 | 0.0 | 8.614951 | 3 |
GTGGTAT | 1900 | 0.0 | 8.60719 | 1 |
AGGACCG | 100 | 0.0029014004 | 8.551606 | 5 |
TACACTG | 670 | 0.0 | 8.367244 | 5 |
TAACACG | 205 | 3.853347E-8 | 8.343031 | 4 |
GTAAGAC | 275 | 2.1827873E-11 | 8.292466 | 3 |
TGGTATC | 1865 | 0.0 | 8.25322 | 2 |
GTCCTAA | 300 | 1.8189894E-12 | 8.240217 | 1 |
TTGGACT | 370 | 0.0 | 8.21776 | 4 |