Basic Statistics
Measure | Value |
---|---|
Filename | SRR1295279_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3104375 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 4820 | 0.15526474733239382 | No Hit |
GTGGTATCAACGCAGAGTACATGGG | 4172 | 0.1343909804711093 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 3997 | 0.12875377491443527 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGTCT | 65 | 8.0436724E-4 | 11.689482 | 6 |
GGTATCA | 2825 | 0.0 | 11.142646 | 1 |
GTGGTAT | 1230 | 0.0 | 10.669714 | 1 |
CTAGACT | 210 | 0.0 | 10.407614 | 4 |
TGGTATC | 1220 | 0.0 | 10.125562 | 2 |
GTCTTAG | 340 | 0.0 | 10.069372 | 1 |
TTATACG | 115 | 1.0238557E-5 | 9.915761 | 4 |
TAGACAG | 470 | 0.0 | 9.704786 | 5 |
TAGGACG | 90 | 0.0011113834 | 9.502603 | 4 |
GTCCTAG | 360 | 0.0 | 9.245797 | 1 |
CTACACT | 435 | 0.0 | 9.174927 | 4 |
TCGCCCA | 280 | 0.0 | 9.1586485 | 12 |
CCAGTAC | 270 | 0.0 | 9.150656 | 3 |
GTATTAA | 490 | 0.0 | 9.121801 | 1 |
TAGACTG | 355 | 0.0 | 8.833406 | 5 |
CTAAGAC | 325 | 0.0 | 8.771634 | 3 |
CTTAGAC | 260 | 7.2759576E-12 | 8.771634 | 3 |
GTCGCCC | 260 | 7.2759576E-12 | 8.767253 | 11 |
GTCCTAA | 315 | 0.0 | 8.755204 | 1 |
GTCCTAC | 220 | 1.5752448E-9 | 8.64542 | 1 |