Basic Statistics
Measure | Value |
---|---|
Filename | SRR1295254_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4731785 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 18268 | 0.38606995034643377 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 15722 | 0.33226361721844927 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 10207 | 0.21571140700602415 | No Hit |
GTGGTATCAACGCAGAGTACATGGG | 7238 | 0.1529655299215835 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 6950 | 0.14687903190867718 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCGTTA | 40 | 0.0052882726 | 14.247132 | 15 |
AGCGTCA | 445 | 0.0 | 12.383718 | 3 |
GGTATCA | 5275 | 0.0 | 12.249158 | 1 |
GTGGTAT | 1895 | 0.0 | 11.984184 | 1 |
TGGTATC | 2035 | 0.0 | 11.158775 | 2 |
CAGCGTC | 510 | 0.0 | 10.9917 | 2 |
GCAGCGT | 510 | 0.0 | 9.874736 | 1 |
TTACACT | 705 | 0.0 | 9.838121 | 4 |
CTGTTCG | 95 | 0.0018256046 | 8.999615 | 9 |
CGCAGTA | 85 | 0.007431097 | 8.942401 | 2 |
GTATAGG | 515 | 0.0 | 8.6718235 | 1 |
CTTACAC | 630 | 0.0 | 8.596415 | 3 |
GTCTTAG | 490 | 0.0 | 8.532501 | 1 |
GCGTCAG | 680 | 0.0 | 8.103965 | 4 |
GTCTAGA | 470 | 0.0 | 8.086897 | 1 |
ATAATAC | 895 | 0.0 | 8.068143 | 3 |
GTATCAA | 9120 | 0.0 | 8.064285 | 1 |
AGGACCG | 130 | 4.1810647E-4 | 8.039817 | 5 |
GTTCTAG | 480 | 0.0 | 7.9184194 | 1 |
GTCCTAC | 385 | 0.0 | 7.8978534 | 1 |