FastQCFastQC Report
Wed 25 May 2016
SRR1295216_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1295216_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2711
Sequences flagged as poor quality0
Sequence length25
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATAAGCAGTGGTATCAACGCA662.434526005164146No Hit
GCTTATGTACTCTGCGTTGATACCA421.549243821468093No Hit
TATGTACTCTGCGTTGATACCACTG240.885282183696053No Hit
CTTATGTACTCTGCGTTGATACCAC230.8483954260420509No Hit
GAGTACATAAGCAGTGGTATCAACG230.8483954260420509No Hit
CCCATGTACTCTGCGTTGATACCAC180.6639616377720399No Hit
AAAAAAAAAAAAAAAAAAAAAAAAA160.5901881224640354No Hit
GCGTTGATACCACTGCTTATGTACT140.5164146071560309No Hit
CTGCTTATGTACTCTGCGTTGATAC130.47952784950202876No Hit
GTGGTATCAACGCAGAGTACATGGG120.4426410918480265No Hit
ACGCAGAGTACATAAGCAGTGGTAT120.4426410918480265No Hit
GTACATGATAAGCAGTGGTATCAAC110.4057543341940244No Hit
ACTCTGCGTTGATACCACTGCTTAT110.4057543341940244No Hit
CATAAGCAGTGGTATCAACGCAGAG110.4057543341940244No Hit
CATGTACTCTGCGTTGATACCACTG100.3688675765400221No Hit
GTATCAACGCAGAGTACTTTTTTTT100.3688675765400221No Hit
GTATCAACGCAGAGTACATAAGCAG90.33198081888601993No Hit
GTACTCTGCGTTGATACCACTGCTT80.2950940612320177No Hit
GTACATGGGAAGCAGTGGTATCAAC80.2950940612320177No Hit
GGTATCAACGCAGAGTACATAAGCA70.25820730357801547No Hit
TATCAACGCAGAGTACATAAGCAGT70.25820730357801547No Hit
GTACTTTTTTTTTTTTTTTTTTTTT70.25820730357801547No Hit
ACATAAGCAGTGGTATCAACGCAGA60.22132054592401326No Hit
GTATCAACGCAGAGTACATGGGGGT60.22132054592401326No Hit
AAGCAGTGGTATCAACGCAGAGTAC60.22132054592401326No Hit
GTTAATGATAGTGTGTCGAAACACA60.22132054592401326No Hit
GATAAGCAGTGGTATCAACGCAGAG60.22132054592401326No Hit
GTGGTATCAACGCAGAGTACATAAG60.22132054592401326No Hit
GTATTTAGCCTTGGAGGATGGTCCC60.22132054592401326No Hit
GAGTACATGATAAGCAGTGGTATCA50.18443378827001106No Hit
GAGTACATGGGATAAGCAGTGGTAT50.18443378827001106No Hit
ACCCTGTATCGCGCGCCTTTCCAGA50.18443378827001106No Hit
GTACATGGGATAAGCAGTGGTATCA50.18443378827001106No Hit
TACCACTGCTTATGTACTCTGCGTT50.18443378827001106No Hit
GTACTGGTTCACTATCGGTCAGTCA50.18443378827001106No Hit
TATCAACGCAGAGTACTTTTTTTTT50.18443378827001106No Hit
ATCATGTACTCTGCGTTGATACCAC50.18443378827001106No Hit
GCTTATCATGTACTCTGCGTTGATA50.18443378827001106No Hit
GGTATCAACGCAGAGTACTTTTTTT50.18443378827001106No Hit
ATACCACTGCTTATGTACTCTGCGT40.14754703061600885No Hit
GTACTTAGATGTTTCAGTTCCCCCG40.14754703061600885No Hit
GTACATGGGGGTTAAGCGACTAAGC40.14754703061600885No Hit
ATACAGGGTGACAGCCCCGTACACA40.14754703061600885No Hit
ACTTAGATGTTTCAGTTCCCCCGGT40.14754703061600885No Hit
GTTCACTATCGGTCAGTCAGGAGTA40.14754703061600885No Hit
GGATACCACGTGTCCCGCCCTACTC40.14754703061600885No Hit
CATCTAAGTACCCCGAGGAAAAGAA40.14754703061600885No Hit
GGGTTTCCCCATTCGGAAATCGCCG40.14754703061600885No Hit
GGTATCAACGCAGAGTACATGGGAA40.14754703061600885No Hit
CGGTTGAGCCGTGGGCTTTCACATC40.14754703061600885No Hit
TCGGTAAGGTGATATGAACCGTTAT40.14754703061600885No Hit
GATATGAACCGTTATAACCGGCGAT40.14754703061600885No Hit
ATCATTAACTGAATCCATAGGTTAA40.14754703061600885No Hit
ACGCAGAGTACTTTTTTTTTTTTTT40.14754703061600885No Hit
CACTGATTCAGGCTCTGGGCTGCTC30.11066027296200663No Hit
TATCAACGCAGAGTACATGATAAGC30.11066027296200663No Hit
GCGTTGATACCACTGCTTATCATGT30.11066027296200663No Hit
GTGTGTGTGTTAGTGGAAGCGTCTG30.11066027296200663No Hit
CTATCGGTCAGTCAGGAGTATTTAG30.11066027296200663No Hit
ATACCACTGCTTCCCATGTACTCTG30.11066027296200663No Hit
CCACTGCTTATGTACTCTGCGTTGA30.11066027296200663No Hit
CCCCAGTAGCGGCGAGCGAACGGGG30.11066027296200663No Hit
CAGTGGTATCAACGCAGAGTACATA30.11066027296200663No Hit
ATCAACGCAGAGTACATAAGCAGTG30.11066027296200663No Hit
GCAGTGGTATCAACGCAGAGTACAT30.11066027296200663No Hit
GTTCATATCACCTTACCGACGCTTA30.11066027296200663No Hit
GTGTTCAATGACTTCTTCCCTACCC30.11066027296200663No Hit
GGGTACTTAGATGTTTCAGTTCCCC30.11066027296200663No Hit
GGAGTATTTAGCCTTGGAGGATGGT30.11066027296200663No Hit
GGTATCAACGCAGAGTACATGGGGG30.11066027296200663No Hit
GGTTAATGAGGCGAACCGGGGGAAC30.11066027296200663No Hit
AGCGTACACGGTGGATGCCCTGGCA30.11066027296200663No Hit
GCTTATCCCATGTACTCTGCGTTGA30.11066027296200663No Hit
GTATCAACGCAGAGTACATGGGTGC30.11066027296200663No Hit
GTGGATGCCCTGGCAGTCAGAGGCG30.11066027296200663No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers