FastQCFastQC Report
Wed 25 May 2016
SRR1295212_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1295212_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15393
Sequences flagged as poor quality0
Sequence length25
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTT320.2078867017475476No Hit
GGTATCAACGCAGAGTACTTTTTTT310.2013902423179367No Hit
TATCAACGCAGAGTACTTTTTTTTT260.16890794516988242No Hit
ACGCAGAGTACTTTTTTTTTTTTTT210.1364256480218281No Hit
GTACATAAGCAGTGGTATCAACGCA180.11693626973299552No Hit
GTGGTATCAACGCAGAGTACATGGG170.11043981030338465No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)