Basic Statistics
Measure | Value |
---|---|
Filename | SRR1295102_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2575935 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 9126 | 0.35427912583197946 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 6857 | 0.26619460506573345 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 3186 | 0.12368324511293957 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 2619 | 0.10167182013521303 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGTACT | 3920 | 0.0 | 17.545979 | 12-13 |
TAGGACG | 170 | 0.0019120139 | 16.597942 | 4 |
TCTGTCG | 435 | 9.640644E-11 | 16.189928 | 8 |
ACTCGCG | 205 | 3.642825E-4 | 16.031977 | 8 |
TGCACCG | 235 | 5.5971228E-5 | 16.009363 | 5 |
TACACCG | 210 | 4.3219508E-4 | 15.675834 | 5 |
GCACCGA | 220 | 6.223139E-4 | 14.941209 | 6 |
AGTACTT | 4495 | 0.0 | 14.831487 | 12-13 |
ACCGAGC | 190 | 0.004057582 | 14.826565 | 8 |
CACCGAG | 320 | 3.2412318E-6 | 14.672123 | 7 |
GTATAGA | 1065 | 0.0 | 14.487364 | 1 |
GTATAGG | 740 | 0.0 | 14.124232 | 1 |
CTCGCGT | 200 | 0.0057044458 | 14.084963 | 9 |
GTACTTT | 4910 | 0.0 | 14.055731 | 14-15 |
CTGTCGC | 435 | 2.719571E-8 | 14.030999 | 9 |
TATACAG | 1600 | 0.0 | 13.814329 | 5 |
CATGGGG | 3550 | 0.0 | 13.777072 | 4 |
CTAATAC | 1265 | 0.0 | 13.754812 | 3 |
ACTACGT | 275 | 2.134763E-4 | 13.680462 | 3 |
CCCGTAA | 255 | 0.0012245454 | 13.662657 | 1 |