SRR1295012_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1295012_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4822698
Sequences flagged as poor quality	0
Sequence length	25
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCATGTACTCTGCGTTGATACCAC	17746	0.3679683032194842	No Hit
GTACATGGGAAGCAGTGGTATCAAC	17274	0.35818125041211374	No Hit
GTATCAACGCAGAGTACTTTTTTTT	15776	0.32711979891753534	No Hit
GGTATCAACGCAGAGTACTTTTTTT	13525	0.2804446805501817	No Hit
TATCAACGCAGAGTACTTTTTTTTT	10643	0.22068559963738138	No Hit
GAGTACATGGGAAGCAGTGGTATCA	8877	0.18406709273522828	No Hit
CATGTACTCTGCGTTGATACCACTG	6711	0.13915447328445613	No Hit
ACGCAGAGTACTTTTTTTTTTTTTT	6040	0.1252410994841477	No Hit
GCGTTGATACCACTGCTTCCCATGT	5653	0.11721654559335873	No Hit
ACGCAGAGTACATGGGAAGCAGTGG	5574	0.11557845836500646	No Hit
GCTTCCCATGTACTCTGCGTTGATA	5220	0.10823816875947861	No Hit
GTATCAACGCAGAGTACATGGGAAG	5098	0.1057084644321498	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCGA	40	0.00528347	14.249091	7
AACGCCG	40	0.005283833	14.248943	6
AACCGTT	100	1.9336458E-6	11.399272	7
GAACCGT	80	3.776362E-4	10.6867075	6
TCTGGAC	540	0.0	9.851121	3
GTCCTAA	510	0.0	9.698426	1
GTCCTAC	395	0.0	9.632322	1
ACCGTCC	110	6.847485E-5	9.499393	8
CTGCCGC	100	2.7593065E-4	9.4993925	9
CTAGGAC	545	0.0	9.412146	3
CTAGTAC	395	0.0	9.37905	3
CTGTCGC	390	0.0	9.255818	9
TAGGACT	635	0.0	8.975713	4
TCTGTCG	350	0.0	8.956572	8
CCGTTTG	85	0.0074433847	8.940606	9
TACACTG	1245	0.0	8.774448	5
GTGTAGG	580	0.0	8.691925	1
CCGTTCA	110	7.153735E-4	8.635813	9
TAGACTG	880	0.0	8.635723	5
GTCTAGA	650	0.0	8.633895	1