Basic Statistics
Measure | Value |
---|---|
Filename | SRR1294744_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4427629 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAAC | 43708 | 0.9871649137721341 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 43360 | 0.9793051766532381 | No Hit |
GAGTACATGGGAAGCAGTGGTATCA | 19263 | 0.43506355207267816 | No Hit |
CATGTACTCTGCGTTGATACCACTG | 15519 | 0.3505036216900739 | No Hit |
GCGTTGATACCACTGCTTCCCATGT | 14311 | 0.3232203962888489 | No Hit |
GTATCAACGCAGAGTACATGGGAAG | 11003 | 0.2485077227563556 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGG | 10694 | 0.24152881824561181 | No Hit |
ACTCTGCGTTGATACCACTGCTTCC | 9348 | 0.21112880053861782 | No Hit |
TATCAACGCAGAGTACATGGGAAGC | 9214 | 0.2081023500388131 | No Hit |
GCTTCCCATGTACTCTGCGTTGATA | 8483 | 0.19159238499883346 | No Hit |
GGTATCAACGCAGAGTACATGGGAA | 7163 | 0.16177958903060757 | No Hit |
GTGGTATCAACGCAGAGTACATGGG | 5698 | 0.12869190259617505 | No Hit |
CAGTGGTATCAACGCAGAGTACATG | 5620 | 0.1269302373798708 | No Hit |
ATACCACTGCTTCCCATGTACTCTG | 4929 | 0.11132369039953437 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGACGT | 85 | 5.3522934E-5 | 11.171434 | 8 |
TCGACCG | 110 | 6.0840302E-6 | 10.359084 | 9 |
TACGACA | 150 | 2.449815E-8 | 10.133117 | 4 |
ATAGGAC | 290 | 0.0 | 9.500225 | 3 |
CTTAGAC | 330 | 0.0 | 9.500225 | 3 |
TTGCGCA | 100 | 2.7580158E-4 | 9.499796 | 4 |
TGGACCG | 240 | 1.8189894E-12 | 9.49926 | 5 |
GACCCGT | 90 | 0.0011183943 | 9.496256 | 6 |
GCGGCTA | 80 | 0.0045354813 | 9.495612 | 13 |
GTCCTAG | 355 | 0.0 | 9.369279 | 1 |
CTAGGAC | 350 | 0.0 | 9.228791 | 3 |
GGACCGT | 145 | 1.717468E-6 | 9.168798 | 6 |
CGACGTA | 95 | 0.0018321541 | 8.996046 | 9 |
TAGGACC | 275 | 0.0 | 8.981626 | 4 |
GTATTAG | 525 | 0.0 | 8.869583 | 1 |
GTATTAA | 840 | 0.0 | 8.82433 | 1 |
GCACCGT | 175 | 2.6446105E-7 | 8.682291 | 6 |
CTAGACT | 340 | 0.0 | 8.661579 | 4 |
TGGCGTA | 165 | 1.0524054E-6 | 8.635691 | 5 |
CGCCTAA | 110 | 7.18344E-4 | 8.63218 | 14 |