Basic Statistics
Measure | Value |
---|---|
Filename | SRR1294717_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2857308 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 4403 | 0.1540960932458104 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 3558 | 0.12452280258201077 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGTCGC | 50 | 0.0015047361 | 13.294536 | 6 |
TACGTCG | 60 | 4.0996246E-4 | 12.664566 | 5 |
CGTAGCA | 110 | 3.8216967E-8 | 12.090174 | 2 |
AGGCGTC | 70 | 0.0014980622 | 10.851923 | 7 |
CTAGGAC | 290 | 0.0 | 10.154555 | 3 |
GTCTAGG | 320 | 0.0 | 10.095257 | 1 |
CAGAACG | 105 | 4.111808E-5 | 9.951427 | 4 |
GTCTAGC | 185 | 6.475602E-10 | 9.758213 | 1 |
CGATTTC | 120 | 1.6899901E-5 | 9.505412 | 16 |
GTCCTAT | 270 | 0.0 | 9.501418 | 1 |
TGAACCG | 90 | 0.0011158059 | 9.498425 | 5 |
TCGTTTG | 90 | 0.0011188464 | 9.495599 | 13 |
TGTGCGA | 80 | 0.0045353584 | 9.495433 | 10 |
TATACTG | 895 | 0.0 | 9.445361 | 5 |
AGGACTG | 660 | 0.0 | 9.354509 | 5 |
TATTAGG | 275 | 0.0 | 9.326705 | 2 |
TTAGACT | 225 | 2.7284841E-11 | 9.287999 | 4 |
ACGTAGC | 115 | 1.1093497E-4 | 9.088313 | 1 |
TAGGACA | 315 | 0.0 | 9.046752 | 4 |
ATCCCGT | 95 | 0.0018312659 | 8.996303 | 6 |