Basic Statistics
Measure | Value |
---|---|
Filename | SRR1294703_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2558561 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 11061 | 0.43231331987003635 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 9192 | 0.35926444591315193 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 6962 | 0.27210607837765055 | No Hit |
GTACATGGGAAGCAGTGGTATCAAC | 6334 | 0.2475610313766215 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 5802 | 0.2267680934712911 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 4719 | 0.18443961273543996 | No Hit |
GAGTACATGGGAAGCAGTGGTATCA | 3307 | 0.12925234145287134 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTTTA | 25 | 0.0060542384 | 18.988508 | 15 |
GTACCGT | 60 | 0.0058945 | 11.079013 | 6 |
CGCACGA | 75 | 0.0026618962 | 10.127205 | 12 |
TATTCCG | 80 | 0.004461293 | 9.514335 | 5 |
CTAGGAC | 250 | 0.0 | 9.514335 | 3 |
GCACCGT | 80 | 0.0045316876 | 9.496296 | 6 |
AACCGTG | 80 | 0.0045375363 | 9.494811 | 7 |
TCAGTAC | 315 | 0.0 | 9.363315 | 3 |
TATACTG | 635 | 0.0 | 9.289587 | 5 |
CGGGTTC | 185 | 6.7720975E-9 | 9.237653 | 18 |
CGTACAC | 165 | 1.0418262E-7 | 9.226022 | 3 |
GTATAGG | 290 | 0.0 | 9.188954 | 1 |
TAGGACT | 290 | 0.0 | 9.186255 | 4 |
TAACACG | 125 | 2.7066331E-5 | 9.133761 | 4 |
TTAGTAC | 210 | 6.493792E-10 | 9.061272 | 3 |
ACTGCGG | 105 | 4.5185795E-4 | 9.042678 | 8 |
TCTACAC | 295 | 0.0 | 9.030556 | 3 |
CGTAGAC | 85 | 0.00734607 | 8.954669 | 3 |
TAGGACC | 170 | 1.6472768E-7 | 8.954669 | 4 |
TTCTAGG | 425 | 0.0 | 8.954668 | 2 |