Basic Statistics
Measure | Value |
---|---|
Filename | SRR1294673_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3991818 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAAC | 12230 | 0.3063766935266087 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 11603 | 0.2906695645943778 | No Hit |
CCCATGTACTCTGCGTTGATACCAC | 11576 | 0.2899931810518416 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 7083 | 0.177437949325345 | No Hit |
GTACTGGTTCACTATCGGTCAGTCA | 6787 | 0.1700227815997623 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 6574 | 0.1646868669864207 | No Hit |
GAGTACATGGGAAGCAGTGGTATCA | 5644 | 0.14138921163239407 | No Hit |
GGATACCACGTGTCCCGCCCTACTC | 5207 | 0.13044181874023314 | No Hit |
GTTAATGATAGTGTGTCGAAACACA | 5171 | 0.12953997401685147 | No Hit |
CATGTACTCTGCGTTGATACCACTG | 4555 | 0.11410840875009834 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGAAAT | 70 | 1.0869677E-4 | 12.220003 | 13 |
TAGACCG | 55 | 0.0030775964 | 12.086864 | 5 |
GTCGTAC | 65 | 8.023772E-4 | 11.693087 | 1 |
CTATACG | 85 | 5.3456602E-5 | 11.172732 | 4 |
CCGTACA | 845 | 0.0 | 11.023602 | 17 |
CCCCGTA | 850 | 0.0 | 10.623017 | 15 |
TGTCCCG | 950 | 0.0 | 10.395869 | 11 |
CCCGTAC | 890 | 0.0 | 10.145706 | 16 |
GCGCTCA | 75 | 0.0026570414 | 10.129689 | 9 |
TAGCACG | 95 | 1.6508531E-4 | 9.9966545 | 4 |
CGCCCTA | 1030 | 0.0 | 9.874047 | 16 |
GTACTGG | 1950 | 0.0 | 9.598076 | 1 |
CCCGCCC | 1070 | 0.0 | 9.504567 | 14 |
GTATTAG | 500 | 0.0 | 9.500633 | 1 |
ATCGCCG | 270 | 0.0 | 9.497893 | 19 |
TCCCGCC | 1090 | 0.0 | 9.417251 | 13 |
AGCGTAC | 1010 | 0.0 | 9.406568 | 1 |
GCCCCGT | 875 | 0.0 | 9.341631 | 14 |
AATCGCC | 275 | 0.0 | 9.332809 | 18 |
GTCCCGC | 1070 | 0.0 | 9.237851 | 12 |