Basic Statistics
Measure | Value |
---|---|
Filename | SRR1294663_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4307882 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCCATGTACTCTGCGTTGATACCAC | 37108 | 0.861397782019099 | No Hit |
GTACATGGGAAGCAGTGGTATCAAC | 33796 | 0.7845154533016457 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 31383 | 0.7285018484721726 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 22169 | 0.5146148385680016 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 19390 | 0.45010517929692595 | No Hit |
GAGTACATGGGAAGCAGTGGTATCA | 17311 | 0.4018448044770029 | No Hit |
CATGTACTCTGCGTTGATACCACTG | 14494 | 0.3364530411928646 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 12454 | 0.28909798364950573 | No Hit |
GCGTTGATACCACTGCTTCCCATGT | 11737 | 0.27245407371882513 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGG | 9632 | 0.22359015404785926 | No Hit |
GTATCAACGCAGAGTACATGGGAAG | 9380 | 0.21774041164544433 | No Hit |
ACTCTGCGTTGATACCACTGCTTCC | 8061 | 0.18712211708677257 | No Hit |
TATCAACGCAGAGTACATGGGAAGC | 8053 | 0.1869364109787594 | No Hit |
ATTCCATTCCATTCCATTCCATTCC | 7694 | 0.1786028493816683 | No Hit |
GGTATCAACGCAGAGTACATGGGAA | 7233 | 0.16790153490740925 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 6888 | 0.1598929589993412 | No Hit |
GAATGGAATGGAATGGAATGGAATG | 6680 | 0.15506460019099874 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 6551 | 0.15207008919928633 | No Hit |
GCTTCCCATGTACTCTGCGTTGATA | 6466 | 0.15009696180164636 | No Hit |
GTACTGGTTCACTATCGGTCAGTCA | 6096 | 0.14150805430603716 | No Hit |
GTGGTATCAACGCAGAGTACATGGG | 5293 | 0.12286780371421502 | No Hit |
CAGTGGTATCAACGCAGAGTACATG | 5244 | 0.12173035380263433 | No Hit |
GGATACCACGTGTCCCGCCCTACTC | 4830 | 0.11212006271295269 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AACCGTA | 40 | 2.7166228E-4 | 16.66157 | 7 |
TCGTTGG | 85 | 4.032496E-6 | 12.27082 | 13 |
CCGTGCA | 75 | 2.0348345E-4 | 11.424277 | 9 |
CCGTACA | 900 | 0.0 | 11.062587 | 17 |
CCCCGTA | 920 | 0.0 | 10.615591 | 15 |
ATCGCCG | 170 | 1.4370016E-10 | 10.597773 | 19 |
AATCGCC | 180 | 3.6379788E-11 | 10.535797 | 18 |
TACACCG | 110 | 5.8954647E-6 | 10.386434 | 5 |
CCCGTAC | 975 | 0.0 | 10.308872 | 16 |
CTGTCGC | 195 | 1.4551915E-11 | 10.252557 | 9 |
GTACTGG | 1730 | 0.0 | 10.223829 | 1 |
GCCCCGT | 850 | 0.0 | 10.151315 | 14 |
CTTACAC | 520 | 0.0 | 10.048747 | 3 |
TACTGGT | 1685 | 0.0 | 10.036278 | 2 |
AACCGTG | 135 | 6.2601794E-7 | 9.873522 | 7 |
TGTCCCG | 1060 | 0.0 | 9.757037 | 11 |
CCCCCGG | 750 | 0.0 | 9.735076 | 18 |
GTCGCCC | 215 | 1.0913936E-11 | 9.709158 | 11 |
CCCCGGT | 745 | 0.0 | 9.5458555 | 19 |
CGCCCTA | 1065 | 0.0 | 9.526734 | 16 |