SRR1294616_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1294616_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4056843
Sequences flagged as poor quality	0
Sequence length	25
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACATGGGAAGCAGTGGTATCAAC	16064	0.3959729277174394	No Hit
CCCATGTACTCTGCGTTGATACCAC	15370	0.3788660295702841	No Hit
GTATCAACGCAGAGTACTTTTTTTT	11893	0.29315899087048725	No Hit
GGTATCAACGCAGAGTACTTTTTTT	7242	0.1785131936335717	No Hit
GAGTACATGGGAAGCAGTGGTATCA	6993	0.17237541605627824	No Hit
TATCAACGCAGAGTACTTTTTTTTT	6824	0.1682096152106453	No Hit
CATGTACTCTGCGTTGATACCACTG	5496	0.13547480146508012	No Hit
GCGTTGATACCACTGCTTCCCATGT	5061	0.12475217798667586	No Hit
GTATCAACGCAGAGTACATGGGAAG	4643	0.11444859956374945	No Hit
ATTCCATTCCATTCCATTCCATTCC	4355	0.10734948332977146	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCCTA	375	0.0	11.151337	16
TAGACTG	520	0.0	11.141199	5
TGTCGCC	245	0.0	10.466282	10
TGTCCCG	400	0.0	10.446771	11
CGTATAC	75	0.0026548554	10.130702	3
GCGTCGG	210	6.548362E-11	9.505389	18
AGCGTCG	230	3.6379788E-12	9.503981	17
TAGGACG	110	6.8623754E-5	9.497416	4
GGTCGAT	80	0.004529627	9.497065	11
TAGTGCG	80	0.004529627	9.497065	7
CTGTCGC	265	0.0	9.317989	9
GTCTTAG	390	0.0	9.256746	1
GTCCCGC	455	0.0	9.190435	12
CTTAGAC	240	1.0913936E-11	9.101803	3
GTACTAG	345	0.0	9.087287	1
ACCGTCC	115	1.1152083E-4	9.084149	8
AGGACAG	840	0.0	9.045158	5
CCCGCCC	475	0.0	9.003549	14
GTATTAG	605	0.0	8.950739	1
TAGACAG	605	0.0	8.947978	5