SRR1294616_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1294616_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4056843
Sequences flagged as poor quality	0
Sequence length	25
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTT	26664	0.6572598446624629	No Hit
GGTATCAACGCAGAGTACTTTTTTT	18147	0.4473182718680511	No Hit
TATCAACGCAGAGTACTTTTTTTTT	17010	0.4192915525693255	No Hit
CCCATGTACTCTGCGTTGATACCAC	16785	0.41374536801153017	No Hit
GTACATGGGAAGCAGTGGTATCAAC	15797	0.38939145537552233	No Hit
ACGCAGAGTACTTTTTTTTTTTTTT	9632	0.2374259984919308	No Hit
GAGTACATGGGAAGCAGTGGTATCA	7731	0.19056690140584687	No Hit
CATGTACTCTGCGTTGATACCACTG	6214	0.15317329263173357	No Hit
GCGTTGATACCACTGCTTCCCATGT	5369	0.132344288403569	No Hit
GTACTTTTTTTTTTTTTTTTTTTTT	4995	0.12312529718305588	No Hit
GAGTACTTTTTTTTTTTTTTTTTTT	4717	0.11627267804053547	No Hit
ACGCAGAGTACATGGGAAGCAGTGG	4650	0.11462114752776975	No Hit
GTATCAACGCAGAGTACATGGGAAG	4573	0.11272311992354646	No Hit
ATTCCATTCCATTCCATTCCATTCC	4196	0.1034301795755961	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTGCT	60	0.005782855	11.107765	9
GCCCTAG	180	3.8744474E-10	10.038204	1
TATCGCG	300	0.0	9.839524	7
ACGACTG	90	0.001090871	9.52212	5
TACCGTA	80	0.0044322335	9.5221195	7
CGTCTAT	80	0.004479527	9.509878	1
TAGACAG	580	0.0	9.357946	5
GAACTGT	540	0.0	9.345785	6
TCTATAC	515	0.0	9.223312	3
TCGCGCG	300	0.0	9.203577	9
ATCGCCG	135	7.0264705E-6	9.130232	19
TTAGACA	410	0.0	9.057627	4
CCCCGGT	325	0.0	9.043792	19
ATCGCGC	340	0.0	8.961995	8
CGCGCGC	320	0.0	8.925883	10
AGGACCG	150	2.6206708E-6	8.887313	5
GAAATCG	150	2.7780752E-6	8.849083	16
CCCCGTA	580	0.0	8.827396	15
TGGACCG	130	4.254464E-5	8.78965	5
CTAATAC	520	0.0	8.769243	3