SRR1294601_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1294601_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5109888
Sequences flagged as poor quality	0
Sequence length	25
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACATGGGAAGCAGTGGTATCAAC	23284	0.4556655644898675	No Hit
CCCATGTACTCTGCGTTGATACCAC	22076	0.43202512462112674	No Hit
GTATCAACGCAGAGTACTTTTTTTT	13624	0.2666203251421557	No Hit
GAGTACATGGGAAGCAGTGGTATCA	10497	0.20542524611106938	No Hit
GGTATCAACGCAGAGTACTTTTTTT	8428	0.16493512186568474	No Hit
CATGTACTCTGCGTTGATACCACTG	8014	0.1568331830364971	No Hit
TATCAACGCAGAGTACTTTTTTTTT	7699	0.15066866436211518	No Hit
GCGTTGATACCACTGCTTCCCATGT	7159	0.1401009180631748	No Hit
GTACTGGTTCACTATCGGTCAGTCA	6680	0.13072693569800356	No Hit
GTATCAACGCAGAGTACATGGGAAG	6649	0.13012026878084215	No Hit
ACGCAGAGTACATGGGAAGCAGTGG	5648	0.11053079832669523	No Hit
TATCAACGCAGAGTACATGGGAAGC	5122	0.10023703063550511	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCGT	50	0.0015040484	13.295675	10
CCGGTCG	65	8.0502103E-4	11.68862	9
CCCCGTA	975	0.0	10.040302	15
TAGACAG	655	0.0	10.00477	5
AAATCGC	210	5.456968E-12	9.957042	17
ATCGCCG	205	4.1836756E-11	9.730162	19
CCGTACA	990	0.0	9.600454	17
CCCGTAC	1020	0.0	9.597537	16
GTCTAGA	520	0.0	9.499329	1
CCGTGCG	110	6.8665766E-5	9.497004	9
TGTCCCG	1035	0.0	9.450662	11
CGCCCTA	1025	0.0	9.365268	16
GTACTAA	360	0.0	9.235459	1
TTAGACA	535	0.0	9.231094	4
GTCCCGC	1060	0.0	9.145343	12
CTTAGAC	450	0.0	9.075181	3
AATCGCC	220	1.6734703E-10	9.073585	18
GTCTAAG	370	0.0	8.985852	1
GTACTGG	1990	0.0	8.974241	1
GTCTTAG	435	0.0	8.95339	1