SRR1294496_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1294496_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3678419
Sequences flagged as poor quality	0
Sequence length	25
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCATGTACTCTGCGTTGATACCAC	11221	0.3050495335088254	No Hit
GTATCAACGCAGAGTACTTTTTTTT	9439	0.2566048076632923	No Hit
ACCATGTACTCTGCGTTGATACCAC	8696	0.23640591243140058	No Hit
GTACATGGTAAGCAGTGGTATCAAC	8076	0.2195508450777358	No Hit
GTGGTAAGCAGTGGTATCAACGCAG	6085	0.16542433039846738	No Hit
TATCAACGCAGAGTACTTTTTTTTT	5654	0.15370734002841982	No Hit
GGTATCAACGCAGAGTACTTTTTTT	5569	0.1513965646654174	No Hit
CATGTACTCTGCGTTGATACCACTG	5534	0.15044506892771053	No Hit
GGTAAGCAGTGGTATCAACGCAGAG	5316	0.14451860976142197	No Hit
GTGGTATCAACGCAGAGTACATGGG	4549	0.12366726030938835	No Hit
CCATGTACTCTGCGTTGATACCACT	4179	0.11360859108220135	No Hit
ACTCTGCGTTGATACCACTGCTTAC	3932	0.10689374973324138	No Hit
GTATCAACGCAGAGTACATGGGAAG	3735	0.10153818800957694	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACCG	45	6.769072E-4	14.7767315	9
CGACCGC	50	0.0015013356	13.2986965	10
ATCGACC	65	5.4600685E-5	13.152914	8
TAGACCG	70	0.0014900788	10.859032	5
TACGCTG	80	3.7672571E-4	10.689359	5
TACGACA	90	9.5041876E-5	10.557535	4
CGTATAC	85	6.586146E-4	10.06071	3
TTATACT	760	0.0	9.501781	4
TAGGTCG	80	0.0045114504	9.501653	5
GACCGCC	90	0.0011152747	9.499068	11
CTTATAC	455	0.0	9.397367	3
GTATAGA	515	0.0	9.044219	1
TAGACAG	555	0.0	8.90245	5
GTTCTAA	385	0.0	8.888408	1
GTTCTAG	330	0.0	8.641509	1
GTCTAGA	465	0.0	8.585756	1
TAGACTG	455	0.0	8.561929	5
TGTACCG	100	0.0029017853	8.551487	5
CTTGTAC	325	0.0	8.478513	3
CTGGACT	505	0.0	8.466933	4