SRR1248496_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1248496_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23375132
Sequences flagged as poor quality	0
Sequence length	100
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	659631	2.82193486650685	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	144943	0.620073503756043	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	123633	0.5289082431705626	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	113511	0.4856058139051364	No Hit
AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	54064	0.2312885334722388	No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	42311	0.18100860350221765	No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	39112	0.16732311928762583	No Hit
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	37992	0.16253170249477092	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	33800	0.1445981139272283	No Hit
AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	28991	0.12402496807290757	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28457	0.12174048899488568	No Hit
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	27500	0.11764639446741948	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTGCTGA	11615	45.03258	9
TACCCGA	17755	40.416447	6
CTACCCG	17425	38.32305	5
ACCCGAC	19270	38.019547	7
GCTTGCT	2235	37.216732	7
CTGCTGA	10975	36.910812	9
GCCTGCT	2330	36.909462	7
CTTGCTG	7405	36.364193	8
CCTGCTG	7780	35.8799	8
CCCGACG	21690	35.684402	8
GTTGCTG	3535	32.03849	8
ACTGGCC	1420	30.115753	3
ATTGCTG	2205	29.62447	8
GTACACG	9770	29.437523	8
CTGCACG	17850	29.38113	7
ACTGCTG	1645	28.853592	8
CCTGCAC	14450	28.553965	6
CGTACAC	7575	28.53762	7
TCGACAC	3255	28.4416	5
CCCTGCA	11700	28.356829	5