SRR1248493_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1248493_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22770588
Sequences flagged as poor quality	0
Sequence length	100
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	703367	3.0889276991880927	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	156105	0.6855554191222466	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	136090	0.5976569423679353	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	120970	0.5312554950271816	No Hit
AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	57862	0.2541085017216068	No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	48342	0.21230018302557668	No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	42061	0.18471635427245006	No Hit
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	41543	0.18244148987281314	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	36833	0.1617569120305545	No Hit
AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	34155	0.14999612658223846	No Hit
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	30038	0.13191578539825144	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	27211	0.11950064706278117	No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	23035	0.10116119970200155	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGCTCAC	1985	47.111744	3
TTGCTGA	9760	44.3944	9
CAGCTCA	2175	43.2123	2
TACCCGA	16785	39.139973	6
CCAGCTC	2550	38.331852	1
GCTTGCT	2265	38.175716	7
CTACCCG	16795	37.66177	5
ACCCGAC	18335	36.80536	7
CTGCTGA	10220	36.004597	9
CTTGCTG	6390	35.88876	8
CCTGCTG	7470	35.795727	8
CCCGACG	19525	35.30844	8
GTTGCTG	2700	34.984188	8
GACACGC	1740	32.679302	2
GCCTGCT	2295	30.714691	7
CTGCACG	16060	29.670853	7
GTACACG	8985	29.027815	8
TCGCGAC	1250	28.94779	6
CCCTGCA	10735	28.498014	5
CCTGCAC	12930	28.348545	6