SRR1248491_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1248491_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16089156
Sequences flagged as poor quality	0
Sequence length	100
%GC	36

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	645516	4.012118472839719	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	149806	0.9310991825798692	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	124417	0.7732972444297265	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	113517	0.7055497504033151	No Hit
AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	56016	0.34815996563150986	No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	47246	0.2936512020891587	No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	40271	0.25029902127867987	No Hit
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	39647	0.24642063262982844	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	34685	0.21557998443175017	No Hit
AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	33125	0.2058840128096216	No Hit
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	27918	0.1735205998375552	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	24931	0.1549553003277487	No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	21979	0.13660753864279768	No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19248	0.1196333729376482	No Hit
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	18869	0.1172777490627849	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTGCTGA	10670	50.782223	9
GCTTGCT	2225	45.62061	7
GTTGCTG	2605	44.91931	8
CTTGCTG	6695	42.115513	8
CCTGCTG	6130	41.70421	8
CTGCTGA	8920	40.830406	9
GCCTGCT	1995	39.10232	7
ATTGCTG	1745	37.164223	8
ACTGCTG	1410	36.6619	8
ACTTGCT	1580	35.69123	7
TACCCGA	11585	35.53411	6
TTTGCTG	3000	34.775482	8
AGTTGCT	945	34.31268	7
ACCCGAC	12565	34.07166	7
CCCGACG	14390	32.657326	8
TGCTTGC	1040	32.53393	6
CTACCCG	11735	32.196423	5
ATGCTGA	2565	31.696081	9
CATGCTG	1320	31.329262	8
ACTGCCT	1305	30.248753	4