Basic Statistics
Measure | Value |
---|---|
Filename | SRR1248490_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16040768 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 32 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 297149 | 1.8524611789161218 | No Hit |
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 67006 | 0.41772314143562206 | No Hit |
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 56278 | 0.35084355063298717 | No Hit |
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 53528 | 0.33369973308011186 | No Hit |
AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 26890 | 0.16763536508975133 | No Hit |
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 21739 | 0.1355234362843475 | No Hit |
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 18434 | 0.11491968464352828 | No Hit |
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 18362 | 0.11447082832941664 | No Hit |
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 16398 | 0.10222702553892682 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTGCTGA | 6235 | 0.0 | 46.20319 | 9 |
GCTTGCT | 1300 | 0.0 | 45.185284 | 7 |
CTTGCTG | 3890 | 0.0 | 41.43559 | 8 |
GCCTGCT | 900 | 0.0 | 39.682716 | 7 |
CTGCTGA | 4485 | 0.0 | 39.607487 | 9 |
CCTGCTG | 3165 | 0.0 | 36.97044 | 8 |
ACTTGCT | 1100 | 0.0 | 34.176506 | 7 |
CAGTGCC | 365 | 0.0 | 33.47477 | 3 |
CCCGACG | 8025 | 0.0 | 33.20221 | 8 |
CCTGGCC | 685 | 0.0 | 31.557627 | 3 |
TGCCAAA | 2245 | 0.0 | 31.398138 | 6 |
TGCTTGC | 750 | 0.0 | 31.328365 | 6 |
GGCTTGC | 330 | 0.0 | 31.328363 | 6 |
CATTGCC | 665 | 0.0 | 31.093395 | 3 |
GTTGCTG | 1825 | 0.0 | 30.89921 | 8 |
CATGCTG | 740 | 0.0 | 29.846617 | 8 |
GTGCTCC | 505 | 0.0 | 29.778011 | 3 |
TCGCGAC | 715 | 0.0 | 29.57573 | 6 |
TGACGAC | 890 | 0.0 | 29.568344 | 6 |
ACTTGCC | 1005 | 0.0 | 29.458565 | 3 |