FastQCFastQC Report
Thu 26 May 2016
SRR1248490_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248490_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16040768
Sequences flagged as poor quality0
Sequence length100
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2971491.8524611789161218No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA670060.41772314143562206No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA562780.35084355063298717No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA535280.33369973308011186No Hit
AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA268900.16763536508975133No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA217390.1355234362843475No Hit
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA184340.11491968464352828No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA183620.11447082832941664No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA163980.10222702553892682No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGCTGA62350.046.203199
GCTTGCT13000.045.1852847
CTTGCTG38900.041.435598
GCCTGCT9000.039.6827167
CTGCTGA44850.039.6074879
CCTGCTG31650.036.970448
ACTTGCT11000.034.1765067
CAGTGCC3650.033.474773
CCCGACG80250.033.202218
CCTGGCC6850.031.5576273
TGCCAAA22450.031.3981386
TGCTTGC7500.031.3283656
GGCTTGC3300.031.3283636
CATTGCC6650.031.0933953
GTTGCTG18250.030.899218
CATGCTG7400.029.8466178
GTGCTCC5050.029.7780113
TCGCGAC7150.029.575736
TGACGAC8900.029.5683446
ACTTGCC10050.029.4585653