Basic Statistics
Measure | Value |
---|---|
Filename | SRR1233100_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 65027818 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGAATTGTAATACGACTCACTATAGGCGCTTTTTTTTTTTTTTTTTTTT | 121169 | 0.18633410089202132 | No Hit |
CTTTTATATATTATATTATTTGATACTTAACACAAAAATAAGTACGGATC | 107605 | 0.16547533549411117 | No Hit |
CGGCCAGTGAATTGTAATACGACTCACTATAGGCGCTTTTTTTTTTTTTT | 100338 | 0.15430011814328445 | No Hit |
CTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACAC | 92960 | 0.14295420461440056 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCCAG | 34395 | 0.0 | 37.0332 | 1 |
CGACGGC | 13985 | 0.0 | 35.566307 | 1 |
GACGGCC | 18280 | 0.0 | 30.785679 | 2 |
ACGGCCA | 24355 | 0.0 | 23.10074 | 3 |
CTGGAAT | 159085 | 0.0 | 23.000433 | 1 |
GGCCAGT | 59600 | 0.0 | 21.33054 | 2 |
CTTTTAT | 146495 | 0.0 | 20.23296 | 1 |
CACGGTC | 21955 | 0.0 | 20.140402 | 1 |
CGGCGAG | 5685 | 0.0 | 19.083075 | 1 |
GCCAGTG | 73240 | 0.0 | 17.575438 | 3 |
TATTATA | 81130 | 0.0 | 16.637884 | 9 |
CTTTATT | 216955 | 0.0 | 16.546135 | 1 |
TATGGCG | 214155 | 0.0 | 16.017359 | 7 |
TGGCGAG | 211210 | 0.0 | 15.839015 | 9 |
ATGGCGA | 219335 | 0.0 | 15.615072 | 8 |
CCAGTGA | 83995 | 0.0 | 15.4679165 | 4 |
TGAATTG | 107690 | 0.0 | 15.4479265 | 2 |
AGTGAAT | 99715 | 0.0 | 15.281331 | 6 |
CGACGGA | 5330 | 0.0 | 15.174698 | 1 |
CGGACGT | 2880 | 0.0 | 15.134944 | 1 |